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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 84  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0848
THR 260.0081
LYS 270.0069
CYS 280.0077
THR 290.0077
VAL 300.0080
SER 310.0080
HIS 320.0110
GLU 330.0108
VAL 340.0110
ALA 350.0085
ASP 360.0112
CYS 370.0098
SER 380.0124
HIS 390.0135
LEU 400.0113
LYS 410.0121
LEU 420.0087
THR 430.0076
GLN 440.0052
VAL 450.0030
PRO 460.0030
ASP 470.0034
ASP 480.0036
LEU 490.0060
PRO 500.0085
THR 510.0099
ASN 520.0123
ILE 530.0113
THR 540.0129
VAL 550.0124
LEU 560.0095
ASN 570.0106
LEU 580.0088
THR 590.0116
HIS 600.0127
ASN 610.0100
GLN 620.0093
LEU 630.0059
ARG 640.0058
ARG 650.0041
LEU 660.0031
PRO 670.0049
ALA 680.0068
ALA 690.0076
ASN 700.0053
PHE 710.0067
THR 720.0092
ARG 730.0091
TYR 740.0093
SER 750.0118
GLN 760.0123
LEU 770.0108
THR 780.0123
SER 790.0111
LEU 800.0086
ASP 810.0084
VAL 820.0063
GLY 830.0080
PHE 840.0089
ASN 850.0071
THR 860.0062
ILE 870.0042
SER 880.0044
LYS 890.0042
LEU 900.0034
GLU 910.0046
PRO 920.0055
GLU 930.0068
LEU 940.0062
CYS 950.0070
GLN 960.0093
LYS 970.0091
LEU 980.0092
PRO 990.0110
MET 1000.0117
LEU 1010.0077
LYS 1020.0084
VAL 1030.0075
LEU 1040.0058
ASN 1050.0054
LEU 1060.0029
GLN 1070.0038
HIS 1080.0043
ASN 1090.0038
GLU 1100.0038
LEU 1110.0028
SER 1120.0029
GLN 1130.0029
LEU 1140.0026
SER 1150.0028
ASP 1160.0025
LYS 1170.0028
THR 1180.0029
PHE 1190.0035
ALA 1200.0037
PHE 1210.0043
CYS 1220.0045
THR 1230.0048
ASN 1240.0055
LEU 1250.0053
THR 1260.0047
GLU 1270.0040
LEU 1280.0029
HIS 1290.0023
LEU 1300.0015
MET 1310.0009
SER 1320.0012
ASN 1330.0017
SER 1340.0019
ILE 1350.0018
GLN 1360.0025
LYS 1370.0026
ILE 1380.0024
LYS 1390.0029
ASN 1400.0032
ASN 1410.0031
PRO 1420.0029
PHE 1430.0037
VAL 1440.0040
LYS 1450.0040
GLN 1460.0038
LYS 1470.0045
ASN 1480.0049
LEU 1490.0048
ILE 1500.0057
THR 1510.0045
LEU 1520.0034
ASP 1530.0029
LEU 1540.0018
SER 1550.0022
HIS 1560.0029
ASN 1570.0019
GLY 1580.0022
LEU 1590.0019
SER 1600.0028
SER 1610.0022
THR 1620.0016
LYS 1630.0023
LEU 1640.0028
GLY 1650.0042
THR 1660.0052
GLN 1670.0063
VAL 1680.0068
GLN 1690.0065
LEU 1700.0066
GLU 1710.0080
ASN 1720.0087
LEU 1730.0073
GLN 1740.0079
GLU 1750.0072
LEU 1760.0053
LEU 1770.0054
LEU 1780.0040
SER 1790.0055
ASN 1800.0063
ASN 1810.0048
LYS 1820.0051
ILE 1830.0040
GLN 1840.0053
ALA 1850.0041
LEU 1860.0027
LYS 1870.0028
SER 1880.0032
GLU 1890.0048
GLU 1900.0029
LEU 1910.0033
ASP 1920.0052
ILE 1930.0059
PHE 1940.0062
ALA 1950.0074
ASN 1960.0092
SER 1970.0084
SER 1980.0092
LEU 1990.0082
LYS 2000.0100
LYS 2010.0086
LEU 2020.0066
GLU 2030.0076
LEU 2040.0065
SER 2050.0087
SER 2060.0098
ASN 2070.0079
GLN 2080.0086
ILE 2090.0068
LYS 2100.0077
GLU 2110.0063
PHE 2120.0041
SER 2130.0037
PRO 2140.0040
GLY 2150.0028
CYS 2160.0014
PHE 2170.0019
HIS 2180.0029
ALA 2190.0042
ILE 2200.0053
GLY 2210.0069
ARG 2220.0071
LEU 2230.0064
PHE 2240.0082
GLY 2250.0086
LEU 2260.0070
PHE 2270.0088
LEU 2280.0089
ASN 2290.0113
ASN 2300.0127
VAL 2310.0110
GLN 2320.0111
LEU 2330.0096
GLY 2340.0092
PRO 2350.0078
SER 2360.0085
LEU 2370.0077
THR 2380.0072
GLU 2390.0062
LYS 2400.0056
LEU 2410.0055
CYS 2420.0049
LEU 2430.0036
GLU 2440.0027
LEU 2450.0032
ALA 2460.0021
ASN 2470.0022
THR 2480.0036
SER 2490.0054
ILE 2500.0059
ARG 2510.0064
ASN 2520.0076
LEU 2530.0075
SER 2540.0090
LEU 2550.0094
SER 2560.0100
ASN 2570.0108
SER 2580.0107
GLN 2590.0106
LEU 2600.0091
SER 2610.0078
THR 2620.0069
THR 2630.0060
SER 2640.0059
ASN 2650.0052
THR 2660.0057
THR 2670.0063
PHE 2680.0054
LEU 2690.0047
GLY 2700.0048
LEU 2710.0045
LYS 2720.0038
TRP 2730.0034
THR 2740.0042
ASN 2750.0046
LEU 2760.0053
THR 2770.0056
MET 2780.0064
LEU 2790.0066
ASP 2800.0074
LEU 2810.0069
SER 2820.0067
TYR 2830.0070
ASN 2840.0073
ASN 2850.0062
LEU 2860.0046
ASN 2870.0044
VAL 2880.0047
VAL 2890.0040
GLY 2900.0048
ASN 2910.0048
ASP 2920.0040
SER 2930.0046
PHE 2940.0037
ALA 2950.0032
TRP 2960.0036
LEU 2970.0037
PRO 2980.0031
GLN 2990.0034
LEU 3000.0040
GLU 3010.0034
TYR 3020.0039
PHE 3030.0038
PHE 3040.0042
LEU 3050.0041
GLU 3060.0032
TYR 3070.0031
ASN 3080.0027
ASN 3090.0024
ILE 3100.0024
GLN 3110.0041
HIS 3120.0042
LEU 3130.0038
PHE 3140.0043
SER 3150.0043
HIS 3160.0041
SER 3170.0039
LEU 3180.0030
HIS 3190.0030
GLY 3200.0026
LEU 3210.0022
PHE 3220.0018
ASN 3230.0017
VAL 3240.0018
ARG 3250.0017
TYR 3260.0019
LEU 3270.0017
ASN 3280.0019
LEU 3290.0015
LYS 3300.0016
ARG 3310.0026
SER 3320.0018
PHE 3330.0017
THR 3340.0025
LYS 3350.0029
GLN 3360.0054
SER 3370.0058
ILE 3380.0097
SER 3390.0106
LEU 3400.0094
ALA 3410.0066
SER 3420.0062
LEU 3430.0053
PRO 3440.0053
LYS 3450.0057
ILE 3460.0057
ASP 3470.0060
ASP 3480.0062
PHE 3490.0057
SER 3500.0052
PHE 3510.0043
GLN 3520.0045
TRP 3530.0036
LEU 3540.0029
LYS 3550.0032
CYS 3560.0020
LEU 3570.0019
GLU 3580.0017
HIS 3590.0015
LEU 3600.0021
ASN 3610.0021
MET 3620.0023
GLU 3630.0022
ASP 3640.0024
ASN 3650.0027
ASP 3660.0057
ILE 3670.0057
PRO 3680.0063
GLY 3690.0059
ILE 3700.0057
LYS 3710.0071
SER 3720.0072
ASN 3730.0072
MET 3740.0066
PHE 3750.0061
THR 3760.0060
GLY 3770.0054
LEU 3780.0044
ILE 3790.0045
ASN 3800.0034
LEU 3810.0033
LYS 3820.0025
TYR 3830.0022
LEU 3840.0027
SER 3850.0027
LEU 3860.0034
SER 3870.0032
ASN 3880.0041
SER 3890.0045
PHE 3900.0050
THR 3910.0068
SER 3920.0063
LEU 3930.0055
ARG 3940.0052
THR 3950.0049
LEU 3960.0048
THR 3970.0056
ASN 3980.0062
GLU 3990.0072
THR 4000.0065
PHE 4010.0059
VAL 4020.0069
SER 4030.0071
LEU 4040.0062
ALA 4050.0067
HIS 4060.0056
SER 4070.0048
PRO 4080.0043
LEU 4090.0035
HIS 4100.0029
ILE 4110.0026
LEU 4120.0030
ASN 4130.0031
LEU 4140.0035
THR 4150.0037
LYS 4160.0045
ASN 4170.0049
LYS 4180.0049
ILE 4190.0039
SER 4200.0036
LYS 4210.0030
ILE 4220.0034
GLU 4230.0042
SER 4240.0052
ASP 4250.0062
ALA 4260.0050
PHE 4270.0048
SER 4280.0058
TRP 4290.0064
LEU 4300.0055
GLY 4310.0049
HIS 4320.0046
LEU 4330.0037
GLU 4340.0032
VAL 4350.0028
LEU 4360.0029
ASP 4370.0029
LEU 4380.0029
GLY 4390.0031
LEU 4400.0038
ASN 4410.0039
GLU 4420.0036
ILE 4430.0027
GLY 4440.0029
GLN 4450.0036
GLU 4460.0051
LEU 4470.0052
THR 4480.0066
GLY 4490.0064
GLN 4500.0070
GLU 4510.0052
TRP 4520.0052
ARG 4530.0067
GLY 4540.0071
LEU 4550.0058
GLU 4560.0056
ASN 4570.0048
ILE 4580.0038
PHE 4590.0032
GLU 4600.0028
ILE 4610.0030
TYR 4620.0028
LEU 4630.0028
SER 4640.0030
TYR 4650.0033
ASN 4660.0031
LYS 4670.0033
TYR 4680.0039
LEU 4690.0044
GLN 4700.0059
LEU 4710.0062
THR 4720.0076
ARG 4730.0085
ASN 4740.0080
SER 4750.0064
PHE 4760.0055
ALA 4770.0069
LEU 4780.0070
VAL 4790.0055
PRO 4800.0054
SER 4810.0041
LEU 4820.0034
GLN 4830.0027
ARG 4840.0026
LEU 4850.0026
MET 4860.0031
LEU 4870.0035
ARG 4880.0035
ARG 4890.0038
VAL 4900.0039
ALA 4910.0051
LEU 4920.0053
LYS 4930.0065
ASN 4940.0073
VAL 4950.0065
ASP 4960.0076
SER 4970.0079
SER 4980.0087
PRO 4990.0077
SER 5000.0062
PRO 5010.0051
PHE 5020.0042
GLN 5030.0048
PRO 5040.0047
LEU 5050.0035
ARG 5060.0015
ASN 5070.0009
LEU 5080.0011
THR 5090.0024
ILE 5100.0028
LEU 5110.0033
ASP 5120.0033
LEU 5130.0036
SER 5140.0038
ASN 5150.0041
ASN 5160.0049
ASN 5170.0054
ILE 5180.0054
ALA 5190.0061
ASN 5200.0060
ILE 5210.0057
ASN 5220.0056
ASP 5230.0051
ASP 5240.0045
MET 5250.0043
LEU 5260.0032
GLU 5270.0035
GLY 5280.0031
LEU 5290.0030
GLU 5300.0035
LYS 5310.0043
LEU 5320.0039
GLU 5330.0045
ILE 5340.0040
LEU 5350.0033
ASP 5360.0034
LEU 5370.0033
GLN 5380.0033
HIS 5390.0038
ASN 5400.0040
ASN 5410.0048
LEU 5420.0040
ALA 5430.0045
ARG 5440.0048
LEU 5450.0040
TRP 5460.0041
LYS 5470.0051
HIS 5480.0059
ALA 5490.0064
ASN 5500.0054
PRO 5510.0063
GLY 5520.0056
GLY 5530.0056
PRO 5540.0049
ILE 5550.0043
TYR 5560.0038
PHE 5570.0038
LEU 5580.0038
LYS 5590.0041
GLY 5600.0046
LEU 5610.0044
SER 5620.0050
HIS 5630.0050
LEU 5640.0045
HIS 5650.0047
ILE 5660.0037
LEU 5670.0031
ASN 5680.0026
LEU 5690.0022
GLU 5700.0022
SER 5710.0032
ASN 5720.0029
GLY 5730.0034
PHE 5740.0032
ASP 5750.0038
GLU 5760.0045
ILE 5770.0041
PRO 5780.0043
VAL 5790.0048
GLU 5800.0045
VAL 5810.0036
PHE 5820.0038
LYS 5830.0046
ASP 5840.0047
LEU 5850.0042
PHE 5860.0045
GLU 5870.0043
LEU 5880.0036
LYS 5890.0031
ILE 5900.0025
ILE 5910.0015
ASP 5920.0010
LEU 5930.0010
GLY 5940.0013
LEU 5950.0019
ASN 5960.0023
ASN 5970.0026
LEU 5980.0025
ASN 5990.0028
THR 6000.0030
LEU 6010.0037
PRO 6020.0042
ALA 6030.0044
SER 6040.0039
VAL 6050.0034
PHE 6060.0033
ASN 6070.0042
ASN 6080.0041
GLN 6090.0031
VAL 6100.0035
SER 6110.0030
LEU 6120.0021
LYS 6130.0014
SER 6140.0010
LEU 6150.0017
ASN 6160.0012
LEU 6170.0014
GLN 6180.0014
LYS 6190.0017
ASN 6200.0019
LEU 6210.0015
ILE 6220.0019
THR 6230.0016
SER 6240.0020
VAL 6250.0027
GLU 6260.0029
LYS 6270.0029
LYS 6280.0028
VAL 6290.0027
PHE 6300.0027
GLY 6310.0030
PRO 6320.0027
ALA 6330.0025
PHE 6340.0022
ARG 6350.0014
ASN 6360.0022
LEU 6370.0025
THR 6380.0029
GLU 6390.0033
LEU 6400.0033
ASP 6410.0022
MET 6420.0018
ARG 6430.0017
PHE 6440.0015
ASN 6450.0014
PRO 6460.0012
PHE 6470.0010
ASP 6480.0015
CYS 6490.0017
THR 6500.0028
CYS 6510.0036
GLU 6520.0041
SER 6530.0029
ILE 6540.0026
ALA 6550.0034
TRP 6560.0039
PHE 6570.0039
VAL 6580.0032
ASN 6590.0038
TRP 6600.0049
ILE 6610.0068
ASN 6620.0067
GLU 6630.0091
THR 6640.0128
HIS 6650.0174
THR 6660.0064
ASN 6670.0051
ILE 6680.0040
PRO 6690.0028
GLU 6700.0021
LEU 6710.0036
SER 6720.0037
SER 6730.0032
HIS 6740.0023
TYR 6750.0020
LEU 6760.0025
CYS 6770.0018
ASN 6780.0026
THR 6790.0029
PRO 6800.0040
PRO 6810.0063
HIS 6820.0059
TYR 6830.0041
HIS 6840.0050
GLY 6850.0051
PHE 6860.0035
PRO 6870.0033
VAL 6880.0022
ARG 6890.0034
LEU 6900.0031
PHE 6910.0024
ASP 6920.0021
THR 6930.0035
SER 6940.0047
SER 6950.0060
CYS 6960.0079
GLU 10.0217
ALA 20.0160
ALA 30.0052
ALA 40.0076
LYS 50.0102
MET 60.0068
GLN 70.0048
ARG 80.0035
LEU 90.0070
VAL 100.0085
LEU 110.0055
LEU 120.0030
LEU 130.0031
ALA 140.0046
ILE 150.0041
SER 160.0058
LEU 170.0043
LEU 180.0111
LEU 190.0154
TYR 200.0149
GLN 210.0186
ASP 220.0291
LEU 230.0385
PRO 240.0369
VAL 250.0364
ARG 260.0471
SER 270.0315
GLU 280.0290
PHE 290.0261
GLU 300.0147
LEU 310.0080
ASP 320.0062
ARG 330.0086
ILE 340.0053
CYS 350.0083
GLY 360.0226
TYR 370.0289
GLY 380.0159
THR 390.0174
ALA 400.0028
ARG 410.0054
CYS 420.0079
ARG 430.0082
LYS 440.0106
LYS 450.0088
CYS 460.0069
ARG 470.0077
SER 480.0067
GLN 490.0079
GLU 500.0034
TYR 510.0029
ARG 520.0061
ILE 530.0086
GLY 540.0115
ARG 550.0137
CYS 560.0137
PRO 570.0155
ASN 580.0155
THR 590.0160
TYR 600.0139
ALA 610.0123
CYS 620.0091
CYS 630.0042
LEU 640.0013
ARG 650.0064
LYS 660.0133
TRP 670.0164
ASP 680.0264
GLU 690.0316
SER 700.0420
LEU 710.0327
LEU 720.0277
ASN 730.0327
ARG 740.0332
THR 750.0260
LYS 760.0257
PRO 770.0224
GLU 780.0278
ALA 790.0329
ALA 800.0307
ALA 810.0367
LYS 820.0310
LYS 830.0250
GLU 840.0167
MET 850.0138
ASN 860.0096
LEU 870.0093
SER 880.0071
VAL 890.0081
GLY 900.0074
LEU 910.0079
GLY 920.0116
GLY 930.0141
GLY 940.0132
SER 950.0104
ASN 960.0054
LEU 970.0062
SER 980.0039
VAL 990.0044
GLY 1000.0059
LEU 1010.0052
GLY 1020.0171
GLU 1030.0196
ILE 1040.0148
GLY 1050.0152
GLY 1060.0311
GLY 1070.0307
SER 1080.0315
LYS 1090.0261
LEU 1100.0272
LEU 1110.0280
ASP 1120.0272
ILE 1130.0206
ASN 1140.0237
LEU 1150.0194
GLY 1160.0216
ARG 1170.0295
GLY 1180.0245
GLY 1190.0245
GLY 1200.0176
SER 1210.0050
MET 1220.0036
VAL 1230.0049
ASP 1240.0048
LEU 1250.0070
THR 1260.0065
PHE 1270.0047
GLY 1280.0070
GLY 1290.0110
VAL 1300.0122
GLY 1310.0054
GLY 1320.0052
GLY 1330.0040
SER 1340.0030
THR 1350.0014
PHE 1360.0039
THR 1370.0039
PHE 1380.0040
PHE 1390.0056
PRO 1400.0062
LEU 1410.0054
VAL 1420.0071
ILE 1430.0114
GLY 1440.0161
GLY 1450.0219
GLY 1460.0087
SER 1470.0085
ASP 1480.0095
ALA 1490.0099
MET 1500.0114
TYR 1510.0046
LEU 1520.0050
GLY 1530.0030
PHE 1540.0035
ALA 1550.0019
ALA 1560.0039
GLY 1570.0036
GLY 1580.0043
GLY 1590.0043
SER 1600.0043
ALA 1610.0049
GLY 1620.0063
GLY 1630.0054
GLU 1640.0041
ASN 1650.0030
HIS 1660.0044
VAL 1670.0050
ALA 1680.0052
PHE 1690.0056
GLY 1700.0063
PRO 1710.0032
GLY 1720.0033
PRO 1730.0033
GLY 1740.0044
VAL 1750.0056
ASP 1760.0056
LEU 1770.0051
THR 1780.0039
PHE 1790.0036
GLY 1800.0026
GLY 1810.0030
VAL 1820.0049
GLN 1830.0057
PHE 1840.0074
ALA 1850.0086
MET 1860.0108
VAL 1870.0116
ASN 1880.0055
ASN 1890.0049
GLY 1900.0053
PRO 1910.0097
GLY 1920.0121
PRO 1930.0144
GLY 1940.0061
GLU 1950.0170
SER 1960.0526
PHE 1970.0265
THR 1980.0134
ALA 1990.0181
GLN 2000.0313
PRO 2010.0296
ALA 2020.0140
ASP 2030.0342
MET 2040.0591
GLN 2050.0508
ALA 2060.0417
GLY 2070.0116
ILE 2080.0526
LYS 2090.0289
GLY 2100.0848
PRO 2110.0325
GLY 2120.0250
PRO 2130.0156
GLY 2140.0497
GLY 2150.0429
SER 2160.0286
ILE 2170.0409
GLN 2180.0226
VAL 2190.0254
ILE 2200.0191
ASN 2210.0160
GLY 2220.0140
SER 2230.0124
THR 2240.0151
ILE 2250.0132
GLY 2260.0184
THR 2270.0172
GLY 2280.0152
SER 2290.0127
LYS 2300.0066
LYS 2310.0110
THR 2320.0135
ILE 2330.0092
LEU 2340.0079
ILE 2350.0091
TYR 2360.0071
SER 2370.0092
ILE 2380.0085
ILE 2390.0087
GLY 2400.0086
VAL 2410.0169
LYS 2420.0111
LYS 2430.0080
GLY 2440.0140
THR 2450.0134
LEU 2460.0056
ALA 2470.0067
TRP 2480.0070
ALA 2490.0095
ARG 2500.0101
THR 2510.0056
GLY 2520.0053
PHE 2530.0086
SER 2540.0105
PRO 2550.0098
ALA 2560.0138
LYS 2570.0060
LYS 2580.0073
LEU 2590.0125
ASN 2600.0209
ALA 2610.0202
GLY 2620.0183
VAL 2630.0214
VAL 2640.0254
ARG 2650.0241
VAL 2660.0148
PHE 2670.0138
PHE 2680.0093
LEU 2690.0109
ASN 2700.0124
GLN 2710.0045
LYS 2720.0115
LYS 2730.0126
ALA 2740.0072
LYS 2750.0037
ASP 2760.0024
VAL 2770.0073
LEU 2780.0119
ARG 2790.0119
LYS 2800.0070
THR 2810.0084
SER 2820.0055
ARG 2830.0031
PRO 2840.0054
MET 2850.0106
VAL 2860.0164
ASP 2870.0108
LEU 2880.0039
THR 2890.0017
PHE 2900.0097
GLY 2910.0073
GLY 2920.0143

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.