CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 85  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0496
THR 260.0108
LYS 270.0104
CYS 280.0096
THR 290.0084
VAL 300.0079
SER 310.0065
HIS 320.0060
GLU 330.0077
VAL 340.0076
ALA 350.0089
ASP 360.0088
CYS 370.0087
SER 380.0097
HIS 390.0110
LEU 400.0106
LYS 410.0129
LEU 420.0116
THR 430.0114
GLN 440.0103
VAL 450.0089
PRO 460.0065
ASP 470.0056
ASP 480.0061
LEU 490.0059
PRO 500.0053
THR 510.0059
ASN 520.0059
ILE 530.0062
THR 540.0064
VAL 550.0068
LEU 560.0072
ASN 570.0086
LEU 580.0089
THR 590.0101
HIS 600.0115
ASN 610.0124
GLN 620.0127
LEU 630.0109
ARG 640.0104
ARG 650.0089
LEU 660.0094
PRO 670.0093
ALA 680.0086
ALA 690.0088
ASN 700.0090
PHE 710.0072
THR 720.0066
ARG 730.0063
TYR 740.0065
SER 750.0060
GLN 760.0066
LEU 770.0072
THR 780.0076
SER 790.0081
LEU 800.0084
ASP 810.0087
VAL 820.0092
GLY 830.0099
PHE 840.0113
ASN 850.0114
THR 860.0110
ILE 870.0103
SER 880.0093
LYS 890.0093
LEU 900.0095
GLU 910.0095
PRO 920.0089
GLU 930.0097
LEU 940.0098
CYS 950.0090
GLN 960.0076
LYS 970.0086
LEU 980.0084
PRO 990.0075
MET 1000.0077
LEU 1010.0095
LYS 1020.0095
VAL 1030.0095
LEU 1040.0095
ASN 1050.0095
LEU 1060.0095
GLN 1070.0097
HIS 1080.0103
ASN 1090.0104
GLU 1100.0099
LEU 1110.0098
SER 1120.0072
GLN 1130.0083
LEU 1140.0081
SER 1150.0104
ASP 1160.0091
LYS 1170.0111
THR 1180.0104
PHE 1190.0091
ALA 1200.0098
PHE 1210.0097
CYS 1220.0092
THR 1230.0087
ASN 1240.0091
LEU 1250.0085
THR 1260.0085
GLU 1270.0085
LEU 1280.0080
HIS 1290.0080
LEU 1300.0071
MET 1310.0074
SER 1320.0072
ASN 1330.0075
SER 1340.0058
ILE 1350.0051
GLN 1360.0050
LYS 1370.0067
ILE 1380.0070
LYS 1390.0098
ASN 1400.0110
ASN 1410.0087
PRO 1420.0085
PHE 1430.0062
VAL 1440.0064
LYS 1450.0079
GLN 1460.0070
LYS 1470.0063
ASN 1480.0068
LEU 1490.0059
ILE 1500.0056
THR 1510.0053
LEU 1520.0042
ASP 1530.0046
LEU 1540.0031
SER 1550.0036
HIS 1560.0042
ASN 1570.0031
GLY 1580.0028
LEU 1590.0034
SER 1600.0053
SER 1610.0070
THR 1620.0057
LYS 1630.0071
LEU 1640.0065
GLY 1650.0084
THR 1660.0104
GLN 1670.0096
VAL 1680.0074
GLN 1690.0059
LEU 1700.0038
GLU 1710.0032
ASN 1720.0031
LEU 1730.0023
GLN 1740.0024
GLU 1750.0024
LEU 1760.0023
LEU 1770.0028
LEU 1780.0022
SER 1790.0034
ASN 1800.0033
ASN 1810.0027
LYS 1820.0038
ILE 1830.0049
GLN 1840.0067
ALA 1850.0078
LEU 1860.0087
LYS 1870.0100
SER 1880.0104
GLU 1890.0109
GLU 1900.0091
LEU 1910.0081
ASP 1920.0091
ILE 1930.0080
PHE 1940.0061
ALA 1950.0072
ASN 1960.0047
SER 1970.0038
SER 1980.0031
LEU 1990.0030
LYS 2000.0029
LYS 2010.0033
LEU 2020.0034
GLU 2030.0036
LEU 2040.0039
SER 2050.0044
SER 2060.0048
ASN 2070.0046
GLN 2080.0055
ILE 2090.0060
LYS 2100.0072
GLU 2110.0080
PHE 2120.0085
SER 2130.0096
PRO 2140.0108
GLY 2150.0111
CYS 2160.0092
PHE 2170.0084
HIS 2180.0090
ALA 2190.0089
ILE 2200.0078
GLY 2210.0063
ARG 2220.0057
LEU 2230.0051
PHE 2240.0047
GLY 2250.0044
LEU 2260.0039
PHE 2270.0039
LEU 2280.0040
ASN 2290.0042
ASN 2300.0044
VAL 2310.0044
GLN 2320.0037
LEU 2330.0040
GLY 2340.0042
PRO 2350.0052
SER 2360.0069
LEU 2370.0064
THR 2380.0068
GLU 2390.0079
LYS 2400.0079
LEU 2410.0076
CYS 2420.0083
LEU 2430.0091
GLU 2440.0089
LEU 2450.0090
ALA 2460.0091
ASN 2470.0097
THR 2480.0083
SER 2490.0073
ILE 2500.0058
ARG 2510.0053
ASN 2520.0044
LEU 2530.0036
SER 2540.0030
LEU 2550.0025
SER 2560.0026
ASN 2570.0024
SER 2580.0024
GLN 2590.0023
LEU 2600.0026
SER 2610.0022
THR 2620.0041
THR 2630.0054
SER 2640.0074
ASN 2650.0093
THR 2660.0093
THR 2670.0077
PHE 2680.0081
LEU 2690.0097
GLY 2700.0098
LEU 2710.0089
LYS 2720.0099
TRP 2730.0105
THR 2740.0091
ASN 2750.0081
LEU 2760.0057
THR 2770.0050
MET 2780.0038
LEU 2790.0029
ASP 2800.0018
LEU 2810.0019
SER 2820.0011
TYR 2830.0010
ASN 2840.0009
ASN 2850.0010
LEU 2860.0008
ASN 2870.0024
VAL 2880.0036
VAL 2890.0045
GLY 2900.0060
ASN 2910.0083
ASP 2920.0083
SER 2930.0073
PHE 2940.0067
ALA 2950.0080
TRP 2960.0087
LEU 2970.0069
PRO 2980.0070
GLN 2990.0062
LEU 3000.0044
GLU 3010.0021
TYR 3020.0017
PHE 3030.0011
PHE 3040.0005
LEU 3050.0011
GLU 3060.0011
TYR 3070.0017
ASN 3080.0014
ASN 3090.0021
ILE 3100.0021
GLN 3110.0043
HIS 3120.0054
LEU 3130.0051
PHE 3140.0064
SER 3150.0073
HIS 3160.0076
SER 3170.0059
LEU 3180.0048
HIS 3190.0063
GLY 3200.0062
LEU 3210.0036
PHE 3220.0033
ASN 3230.0024
VAL 3240.0015
ARG 3250.0018
TYR 3260.0026
LEU 3270.0022
ASN 3280.0026
LEU 3290.0028
LYS 3300.0036
ARG 3310.0035
SER 3320.0027
PHE 3330.0037
THR 3340.0048
LYS 3350.0063
GLN 3360.0128
SER 3370.0147
ILE 3380.0207
SER 3390.0218
LEU 3400.0166
ALA 3410.0142
SER 3420.0106
LEU 3430.0102
PRO 3440.0071
LYS 3450.0086
ILE 3460.0058
ASP 3470.0061
ASP 3480.0064
PHE 3490.0057
SER 3500.0052
PHE 3510.0043
GLN 3520.0046
TRP 3530.0033
LEU 3540.0024
LYS 3550.0025
CYS 3560.0031
LEU 3570.0038
GLU 3580.0051
HIS 3590.0055
LEU 3600.0053
ASN 3610.0053
MET 3620.0054
GLU 3630.0056
ASP 3640.0058
ASN 3650.0057
ASP 3660.0067
ILE 3670.0067
PRO 3680.0067
GLY 3690.0069
ILE 3700.0071
LYS 3710.0068
SER 3720.0068
ASN 3730.0062
MET 3740.0061
PHE 3750.0061
THR 3760.0060
GLY 3770.0056
LEU 3780.0059
ILE 3790.0062
ASN 3800.0065
LEU 3810.0074
LYS 3820.0077
TYR 3830.0074
LEU 3840.0071
SER 3850.0068
LEU 3860.0063
SER 3870.0059
ASN 3880.0062
SER 3890.0068
PHE 3900.0066
THR 3910.0067
SER 3920.0046
LEU 3930.0062
ARG 3940.0063
THR 3950.0095
LEU 3960.0078
THR 3970.0100
ASN 3980.0107
GLU 3990.0122
THR 4000.0105
PHE 4010.0084
VAL 4020.0100
SER 4030.0100
LEU 4040.0096
ALA 4050.0107
HIS 4060.0103
SER 4070.0095
PRO 4080.0095
LEU 4090.0085
HIS 4100.0080
ILE 4110.0067
LEU 4120.0063
ASN 4130.0055
LEU 4140.0051
THR 4150.0039
LYS 4160.0032
ASN 4170.0045
LYS 4180.0042
ILE 4190.0059
SER 4200.0076
LYS 4210.0093
ILE 4220.0086
GLU 4230.0108
SER 4240.0108
ASP 4250.0100
ALA 4260.0090
PHE 4270.0077
SER 4280.0090
TRP 4290.0100
LEU 4300.0083
GLY 4310.0085
HIS 4320.0081
LEU 4330.0065
GLU 4340.0052
VAL 4350.0044
LEU 4360.0037
ASP 4370.0033
LEU 4380.0037
GLY 4390.0031
LEU 4400.0031
ASN 4410.0043
GLU 4420.0062
ILE 4430.0070
GLY 4440.0092
GLN 4450.0102
GLU 4460.0114
LEU 4470.0094
THR 4480.0105
GLY 4490.0082
GLN 4500.0087
GLU 4510.0084
TRP 4520.0063
ARG 4530.0073
GLY 4540.0068
LEU 4550.0048
GLU 4560.0045
ASN 4570.0040
ILE 4580.0033
PHE 4590.0039
GLU 4600.0038
ILE 4610.0037
TYR 4620.0038
LEU 4630.0044
SER 4640.0046
TYR 4650.0048
ASN 4660.0057
LYS 4670.0081
TYR 4680.0092
LEU 4690.0084
GLN 4700.0099
LEU 4710.0094
THR 4720.0096
ARG 4730.0096
ASN 4740.0083
SER 4750.0077
PHE 4760.0074
ALA 4770.0079
LEU 4780.0063
VAL 4790.0055
PRO 4800.0068
SER 4810.0059
LEU 4820.0059
GLN 4830.0067
ARG 4840.0064
LEU 4850.0062
MET 4860.0056
LEU 4870.0057
ARG 4880.0056
ARG 4890.0057
VAL 4900.0059
ALA 4910.0084
LEU 4920.0078
LYS 4930.0096
ASN 4940.0099
VAL 4950.0090
ASP 4960.0090
SER 4970.0101
SER 4980.0120
PRO 4990.0119
SER 5000.0099
PRO 5010.0090
PHE 5020.0088
GLN 5030.0097
PRO 5040.0094
LEU 5050.0089
ARG 5060.0093
ASN 5070.0091
LEU 5080.0084
THR 5090.0083
ILE 5100.0076
LEU 5110.0069
ASP 5120.0058
LEU 5130.0052
SER 5140.0045
ASN 5150.0039
ASN 5160.0047
ASN 5170.0036
ILE 5180.0041
ALA 5190.0040
ASN 5200.0051
ILE 5210.0066
ASN 5220.0078
ASP 5230.0079
ASP 5240.0091
MET 5250.0085
LEU 5260.0077
GLU 5270.0087
GLY 5280.0094
LEU 5290.0087
GLU 5300.0093
LYS 5310.0084
LEU 5320.0070
GLU 5330.0069
ILE 5340.0058
LEU 5350.0045
ASP 5360.0040
LEU 5370.0028
GLN 5380.0028
HIS 5390.0028
ASN 5400.0026
ASN 5410.0042
LEU 5420.0035
ALA 5430.0056
ARG 5440.0064
LEU 5450.0043
TRP 5460.0045
LYS 5470.0072
HIS 5480.0071
ALA 5490.0101
ASN 5500.0092
PRO 5510.0127
GLY 5520.0114
GLY 5530.0079
PRO 5540.0048
ILE 5550.0042
TYR 5560.0031
PHE 5570.0040
LEU 5580.0045
LYS 5590.0047
GLY 5600.0060
LEU 5610.0048
SER 5620.0058
HIS 5630.0063
LEU 5640.0052
HIS 5650.0057
ILE 5660.0051
LEU 5670.0038
ASN 5680.0032
LEU 5690.0026
GLU 5700.0035
SER 5710.0046
ASN 5720.0038
GLY 5730.0058
PHE 5740.0056
ASP 5750.0075
GLU 5760.0070
ILE 5770.0055
PRO 5780.0045
VAL 5790.0050
GLU 5800.0035
VAL 5810.0024
PHE 5820.0033
LYS 5830.0034
ASP 5840.0039
LEU 5850.0042
PHE 5860.0037
GLU 5870.0045
LEU 5880.0042
LYS 5890.0053
ILE 5900.0052
ILE 5910.0050
ASP 5920.0043
LEU 5930.0046
GLY 5940.0047
LEU 5950.0047
ASN 5960.0066
ASN 5970.0078
LEU 5980.0081
ASN 5990.0096
THR 6000.0102
LEU 6010.0086
PRO 6020.0092
ALA 6030.0099
SER 6040.0092
VAL 6050.0076
PHE 6060.0057
ASN 6070.0064
ASN 6080.0055
GLN 6090.0053
VAL 6100.0064
SER 6110.0057
LEU 6120.0052
LYS 6130.0052
SER 6140.0046
LEU 6150.0047
ASN 6160.0047
LEU 6170.0057
GLN 6180.0046
LYS 6190.0056
ASN 6200.0072
LEU 6210.0101
ILE 6220.0100
THR 6230.0099
SER 6240.0106
VAL 6250.0104
GLU 6260.0098
LYS 6270.0103
LYS 6280.0115
VAL 6290.0100
PHE 6300.0086
GLY 6310.0080
PRO 6320.0080
ALA 6330.0070
PHE 6340.0068
ARG 6350.0076
ASN 6360.0060
LEU 6370.0049
THR 6380.0044
GLU 6390.0037
LEU 6400.0036
ASP 6410.0037
MET 6420.0047
ARG 6430.0034
PHE 6440.0050
ASN 6450.0064
PRO 6460.0096
PHE 6470.0077
ASP 6480.0094
CYS 6490.0073
THR 6500.0105
CYS 6510.0156
GLU 6520.0190
SER 6530.0151
ILE 6540.0107
ALA 6550.0139
TRP 6560.0073
PHE 6570.0060
VAL 6580.0056
ASN 6590.0073
TRP 6600.0073
ILE 6610.0083
ASN 6620.0082
GLU 6630.0084
THR 6640.0072
HIS 6650.0058
THR 6660.0039
ASN 6670.0037
ILE 6680.0026
PRO 6690.0024
GLU 6700.0020
LEU 6710.0040
SER 6720.0053
SER 6730.0047
HIS 6740.0025
TYR 6750.0014
LEU 6760.0049
CYS 6770.0043
ASN 6780.0096
THR 6790.0113
PRO 6800.0089
PRO 6810.0106
HIS 6820.0055
TYR 6830.0039
HIS 6840.0098
GLY 6850.0119
PHE 6860.0076
PRO 6870.0060
VAL 6880.0041
ARG 6890.0078
LEU 6900.0102
PHE 6910.0095
ASP 6920.0182
THR 6930.0223
SER 6940.0315
SER 6950.0301
CYS 6960.0297
GLU 10.0063
ALA 20.0117
ALA 30.0107
ALA 40.0053
LYS 50.0092
MET 60.0143
GLN 70.0130
ARG 80.0085
LEU 90.0134
VAL 100.0174
LEU 110.0115
LEU 120.0087
LEU 130.0121
ALA 140.0126
ILE 150.0084
SER 160.0063
LEU 170.0081
LEU 180.0105
LEU 190.0082
TYR 200.0066
GLN 210.0116
ASP 220.0267
LEU 230.0316
PRO 240.0306
VAL 250.0246
ARG 260.0308
SER 270.0296
GLU 280.0210
PHE 290.0250
GLU 300.0252
LEU 310.0148
ASP 320.0091
ARG 330.0112
ILE 340.0071
CYS 350.0027
GLY 360.0230
TYR 370.0280
GLY 380.0194
THR 390.0247
ALA 400.0123
ARG 410.0106
CYS 420.0073
ARG 430.0066
LYS 440.0070
LYS 450.0097
CYS 460.0139
ARG 470.0175
SER 480.0243
GLN 490.0246
GLU 500.0192
TYR 510.0153
ARG 520.0108
ILE 530.0092
GLY 540.0070
ARG 550.0084
CYS 560.0085
PRO 570.0100
ASN 580.0102
THR 590.0102
TYR 600.0089
ALA 610.0096
CYS 620.0073
CYS 630.0114
LEU 640.0144
ARG 650.0197
LYS 660.0453
TRP 670.0496
ASP 680.0298
GLU 690.0286
SER 700.0195
LEU 710.0362
LEU 720.0337
ASN 730.0216
ARG 740.0328
THR 750.0383
LYS 760.0388
PRO 770.0384
GLU 780.0371
ALA 790.0349
ALA 800.0375
ALA 810.0300
LYS 820.0176
LYS 830.0153
GLU 840.0126
MET 850.0136
ASN 860.0181
LEU 870.0143
SER 880.0136
VAL 890.0124
GLY 900.0121
LEU 910.0150
GLY 920.0315
GLY 930.0436
GLY 940.0397
SER 950.0225
ASN 960.0128
LEU 970.0132
SER 980.0161
VAL 990.0175
GLY 1000.0219
LEU 1010.0158
GLY 1020.0129
GLU 1030.0103
ILE 1040.0176
GLY 1050.0210
GLY 1060.0175
GLY 1070.0159
SER 1080.0155
LYS 1090.0138
LEU 1100.0128
LEU 1110.0120
ASP 1120.0133
ILE 1130.0117
ASN 1140.0148
LEU 1150.0134
GLY 1160.0160
ARG 1170.0130
GLY 1180.0195
GLY 1190.0134
GLY 1200.0074
SER 1210.0090
MET 1220.0079
VAL 1230.0064
ASP 1240.0051
LEU 1250.0044
THR 1260.0042
PHE 1270.0066
GLY 1280.0089
GLY 1290.0121
VAL 1300.0134
GLY 1310.0124
GLY 1320.0121
GLY 1330.0103
SER 1340.0101
THR 1350.0082
PHE 1360.0090
THR 1370.0084
PHE 1380.0083
PHE 1390.0086
PRO 1400.0080
LEU 1410.0066
VAL 1420.0053
ILE 1430.0072
GLY 1440.0137
GLY 1450.0185
GLY 1460.0116
SER 1470.0091
ASP 1480.0096
ALA 1490.0063
MET 1500.0052
TYR 1510.0047
LEU 1520.0058
GLY 1530.0079
PHE 1540.0092
ALA 1550.0113
ALA 1560.0141
GLY 1570.0105
GLY 1580.0069
GLY 1590.0035
SER 1600.0041
ALA 1610.0063
GLY 1620.0055
GLY 1630.0067
GLU 1640.0065
ASN 1650.0076
HIS 1660.0040
VAL 1670.0043
ALA 1680.0041
PHE 1690.0063
GLY 1700.0074
PRO 1710.0104
GLY 1720.0112
PRO 1730.0116
GLY 1740.0096
VAL 1750.0086
ASP 1760.0035
LEU 1770.0061
THR 1780.0089
PHE 1790.0144
GLY 1800.0199
GLY 1810.0278
VAL 1820.0248
GLN 1830.0154
PHE 1840.0130
ALA 1850.0078
MET 1860.0133
VAL 1870.0093
ASN 1880.0056
ASN 1890.0077
GLY 1900.0038
PRO 1910.0201
GLY 1920.0150
PRO 1930.0179
GLY 1940.0193
GLU 1950.0111
SER 1960.0340
PHE 1970.0199
THR 1980.0119
ALA 1990.0121
GLN 2000.0176
PRO 2010.0146
ALA 2020.0093
ASP 2030.0163
MET 2040.0173
GLN 2050.0163
ALA 2060.0122
GLY 2070.0076
ILE 2080.0079
LYS 2090.0061
GLY 2100.0042
PRO 2110.0048
GLY 2120.0095
PRO 2130.0082
GLY 2140.0262
GLY 2150.0365
SER 2160.0270
ILE 2170.0329
GLN 2180.0224
VAL 2190.0333
ILE 2200.0363
ASN 2210.0403
GLY 2220.0325
SER 2230.0074
THR 2240.0210
ILE 2250.0191
GLY 2260.0223
THR 2270.0087
GLY 2280.0091
SER 2290.0178
LYS 2300.0127
LYS 2310.0066
THR 2320.0037
ILE 2330.0042
LEU 2340.0023
ILE 2350.0025
TYR 2360.0097
SER 2370.0111
ILE 2380.0119
ILE 2390.0105
GLY 2400.0126
VAL 2410.0228
LYS 2420.0140
LYS 2430.0062
GLY 2440.0104
THR 2450.0082
LEU 2460.0051
ALA 2470.0032
TRP 2480.0033
ALA 2490.0039
ARG 2500.0035
THR 2510.0036
GLY 2520.0022
PHE 2530.0021
SER 2540.0032
PRO 2550.0039
ALA 2560.0051
LYS 2570.0051
LYS 2580.0068
LEU 2590.0083
ASN 2600.0107
ALA 2610.0184
GLY 2620.0117
VAL 2630.0098
VAL 2640.0081
ARG 2650.0047
VAL 2660.0024
PHE 2670.0012
PHE 2680.0060
LEU 2690.0067
ASN 2700.0104
GLN 2710.0084
LYS 2720.0065
LYS 2730.0090
ALA 2740.0094
LYS 2750.0081
ASP 2760.0082
VAL 2770.0085
LEU 2780.0184
ARG 2790.0187
LYS 2800.0105
THR 2810.0003
SER 2820.0013
ARG 2830.0027
PRO 2840.0036
MET 2850.0048
VAL 2860.0068
ASP 2870.0055
LEU 2880.0044
THR 2890.0041
PHE 2900.0048
GLY 2910.0068
GLY 2920.0106

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.