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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 86  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0835
THR 260.0079
LYS 270.0072
CYS 280.0056
THR 290.0032
VAL 300.0022
SER 310.0026
HIS 320.0026
GLU 330.0043
VAL 340.0050
ALA 350.0054
ASP 360.0049
CYS 370.0060
SER 380.0070
HIS 390.0083
LEU 400.0082
LYS 410.0087
LEU 420.0084
THR 430.0077
GLN 440.0077
VAL 450.0078
PRO 460.0074
ASP 470.0079
ASP 480.0081
LEU 490.0081
PRO 500.0087
THR 510.0096
ASN 520.0093
ILE 530.0086
THR 540.0090
VAL 550.0082
LEU 560.0070
ASN 570.0073
LEU 580.0076
THR 590.0079
HIS 600.0082
ASN 610.0084
GLN 620.0079
LEU 630.0070
ARG 640.0062
ARG 650.0054
LEU 660.0064
PRO 670.0066
ALA 680.0069
ALA 690.0077
ASN 700.0083
PHE 710.0083
THR 720.0089
ARG 730.0092
TYR 740.0090
SER 750.0095
GLN 760.0097
LEU 770.0089
THR 780.0089
SER 790.0080
LEU 800.0072
ASP 810.0067
VAL 820.0065
GLY 830.0066
PHE 840.0068
ASN 850.0066
THR 860.0057
ILE 870.0052
SER 880.0042
LYS 890.0040
LEU 900.0042
GLU 910.0045
PRO 920.0040
GLU 930.0048
LEU 940.0057
CYS 950.0054
GLN 960.0060
LYS 970.0067
LEU 980.0071
PRO 990.0069
MET 1000.0076
LEU 1010.0059
LYS 1020.0061
VAL 1030.0059
LEU 1040.0051
ASN 1050.0049
LEU 1060.0046
GLN 1070.0048
HIS 1080.0047
ASN 1090.0045
GLU 1100.0041
LEU 1110.0033
SER 1120.0028
GLN 1130.0026
LEU 1140.0026
SER 1150.0026
ASP 1160.0026
LYS 1170.0026
THR 1180.0027
PHE 1190.0027
ALA 1200.0026
PHE 1210.0030
CYS 1220.0031
THR 1230.0033
ASN 1240.0035
LEU 1250.0034
THR 1260.0036
GLU 1270.0036
LEU 1280.0032
HIS 1290.0033
LEU 1300.0028
MET 1310.0035
SER 1320.0033
ASN 1330.0030
SER 1340.0027
ILE 1350.0026
GLN 1360.0025
LYS 1370.0025
ILE 1380.0025
LYS 1390.0024
ASN 1400.0024
ASN 1410.0019
PRO 1420.0017
PHE 1430.0017
VAL 1440.0019
LYS 1450.0017
GLN 1460.0015
LYS 1470.0012
ASN 1480.0013
LEU 1490.0013
ILE 1500.0011
THR 1510.0021
LEU 1520.0021
ASP 1530.0022
LEU 1540.0021
SER 1550.0023
HIS 1560.0028
ASN 1570.0025
GLY 1580.0023
LEU 1590.0021
SER 1600.0021
SER 1610.0018
THR 1620.0020
LYS 1630.0018
LEU 1640.0020
GLY 1650.0018
THR 1660.0007
GLN 1670.0014
VAL 1680.0018
GLN 1690.0018
LEU 1700.0019
GLU 1710.0019
ASN 1720.0024
LEU 1730.0020
GLN 1740.0025
GLU 1750.0021
LEU 1760.0020
LEU 1770.0020
LEU 1780.0017
SER 1790.0018
ASN 1800.0018
ASN 1810.0022
LYS 1820.0018
ILE 1830.0019
GLN 1840.0018
ALA 1850.0025
LEU 1860.0035
LYS 1870.0037
SER 1880.0043
GLU 1890.0040
GLU 1900.0038
LEU 1910.0033
ASP 1920.0035
ILE 1930.0035
PHE 1940.0039
ALA 1950.0042
ASN 1960.0041
SER 1970.0041
SER 1980.0049
LEU 1990.0044
LYS 2000.0052
LYS 2010.0042
LEU 2020.0036
GLU 2030.0032
LEU 2040.0026
SER 2050.0027
SER 2060.0023
ASN 2070.0024
GLN 2080.0022
ILE 2090.0027
LYS 2100.0028
GLU 2110.0048
PHE 2120.0052
SER 2130.0053
PRO 2140.0059
GLY 2150.0063
CYS 2160.0059
PHE 2170.0059
HIS 2180.0062
ALA 2190.0063
ILE 2200.0062
GLY 2210.0064
ARG 2220.0067
LEU 2230.0061
PHE 2240.0065
GLY 2250.0058
LEU 2260.0050
PHE 2270.0046
LEU 2280.0043
ASN 2290.0040
ASN 2300.0036
VAL 2310.0044
GLN 2320.0041
LEU 2330.0046
GLY 2340.0043
PRO 2350.0048
SER 2360.0061
LEU 2370.0061
THR 2380.0059
GLU 2390.0067
LYS 2400.0073
LEU 2410.0067
CYS 2420.0067
LEU 2430.0075
GLU 2440.0078
LEU 2450.0074
ALA 2460.0083
ASN 2470.0089
THR 2480.0087
SER 2490.0081
ILE 2500.0069
ARG 2510.0062
ASN 2520.0057
LEU 2530.0053
SER 2540.0047
LEU 2550.0042
SER 2560.0036
ASN 2570.0035
SER 2580.0043
GLN 2590.0038
LEU 2600.0038
SER 2610.0038
THR 2620.0046
THR 2630.0051
SER 2640.0069
ASN 2650.0079
THR 2660.0083
THR 2670.0070
PHE 2680.0062
LEU 2690.0076
GLY 2700.0083
LEU 2710.0069
LYS 2720.0072
TRP 2730.0084
THR 2740.0072
ASN 2750.0059
LEU 2760.0043
THR 2770.0032
MET 2780.0033
LEU 2790.0030
ASP 2800.0029
LEU 2810.0027
SER 2820.0023
TYR 2830.0024
ASN 2840.0027
ASN 2850.0019
LEU 2860.0022
ASN 2870.0025
VAL 2880.0039
VAL 2890.0043
GLY 2900.0060
ASN 2910.0075
ASP 2920.0069
SER 2930.0057
PHE 2940.0042
ALA 2950.0054
TRP 2960.0056
LEU 2970.0035
PRO 2980.0032
GLN 2990.0015
LEU 3000.0012
GLU 3010.0030
TYR 3020.0032
PHE 3030.0018
PHE 3040.0020
LEU 3050.0012
GLU 3060.0005
TYR 3070.0008
ASN 3080.0006
ASN 3090.0007
ILE 3100.0017
GLN 3110.0027
HIS 3120.0041
LEU 3130.0045
PHE 3140.0059
SER 3150.0071
HIS 3160.0076
SER 3170.0054
LEU 3180.0047
HIS 3190.0061
GLY 3200.0054
LEU 3210.0046
PHE 3220.0060
ASN 3230.0053
VAL 3240.0050
ARG 3250.0065
TYR 3260.0058
LEU 3270.0045
ASN 3280.0040
LEU 3290.0032
LYS 3300.0032
ARG 3310.0023
SER 3320.0019
PHE 3330.0022
THR 3340.0021
LYS 3350.0032
GLN 3360.0063
SER 3370.0077
ILE 3380.0111
SER 3390.0121
LEU 3400.0093
ALA 3410.0073
SER 3420.0053
LEU 3430.0054
PRO 3440.0041
LYS 3450.0056
ILE 3460.0049
ASP 3470.0055
ASP 3480.0065
PHE 3490.0071
SER 3500.0062
PHE 3510.0069
GLN 3520.0083
TRP 3530.0071
LEU 3540.0069
LYS 3550.0085
CYS 3560.0089
LEU 3570.0082
GLU 3580.0090
HIS 3590.0081
LEU 3600.0069
ASN 3610.0056
MET 3620.0047
GLU 3630.0047
ASP 3640.0040
ASN 3650.0031
ASP 3660.0031
ILE 3670.0030
PRO 3680.0024
GLY 3690.0027
ILE 3700.0032
LYS 3710.0048
SER 3720.0056
ASN 3730.0060
MET 3740.0057
PHE 3750.0064
THR 3760.0080
GLY 3770.0086
LEU 3780.0086
ILE 3790.0096
ASN 3800.0098
LEU 3810.0085
LYS 3820.0087
TYR 3830.0078
LEU 3840.0063
SER 3850.0056
LEU 3860.0039
SER 3870.0042
ASN 3880.0037
SER 3890.0033
PHE 3900.0022
THR 3910.0025
SER 3920.0022
LEU 3930.0016
ARG 3940.0036
THR 3950.0040
LEU 3960.0023
THR 3970.0032
ASN 3980.0031
GLU 3990.0040
THR 4000.0027
PHE 4010.0030
VAL 4020.0045
SER 4030.0054
LEU 4040.0054
ALA 4050.0059
HIS 4060.0072
SER 4070.0068
PRO 4080.0073
LEU 4090.0062
HIS 4100.0063
ILE 4110.0048
LEU 4120.0031
ASN 4130.0031
LEU 4140.0018
THR 4150.0033
LYS 4160.0043
ASN 4170.0029
LYS 4180.0040
ILE 4190.0035
SER 4200.0049
LYS 4210.0049
ILE 4220.0041
GLU 4230.0046
SER 4240.0045
ASP 4250.0033
ALA 4260.0026
PHE 4270.0013
SER 4280.0019
TRP 4290.0025
LEU 4300.0020
GLY 4310.0020
HIS 4320.0021
LEU 4330.0013
GLU 4340.0024
VAL 4350.0029
LEU 4360.0023
ASP 4370.0027
LEU 4380.0032
GLY 4390.0039
LEU 4400.0042
ASN 4410.0044
GLU 4420.0048
ILE 4430.0046
GLY 4440.0051
GLN 4450.0050
GLU 4460.0048
LEU 4470.0046
THR 4480.0048
GLY 4490.0046
GLN 4500.0045
GLU 4510.0040
TRP 4520.0036
ARG 4530.0035
GLY 4540.0028
LEU 4550.0027
GLU 4560.0032
ASN 4570.0030
ILE 4580.0033
PHE 4590.0036
GLU 4600.0036
ILE 4610.0039
TYR 4620.0039
LEU 4630.0037
SER 4640.0039
TYR 4650.0042
ASN 4660.0042
LYS 4670.0040
TYR 4680.0040
LEU 4690.0040
GLN 4700.0040
LEU 4710.0042
THR 4720.0039
ARG 4730.0040
ASN 4740.0044
SER 4750.0046
PHE 4760.0047
ALA 4770.0051
LEU 4780.0051
VAL 4790.0052
PRO 4800.0056
SER 4810.0056
LEU 4820.0051
GLN 4830.0052
ARG 4840.0049
LEU 4850.0044
MET 4860.0044
LEU 4870.0036
ARG 4880.0045
ARG 4890.0046
VAL 4900.0035
ALA 4910.0042
LEU 4920.0043
LYS 4930.0038
ASN 4940.0037
VAL 4950.0041
ASP 4960.0044
SER 4970.0039
SER 4980.0041
PRO 4990.0041
SER 5000.0040
PRO 5010.0038
PHE 5020.0040
GLN 5030.0038
PRO 5040.0044
LEU 5050.0048
ARG 5060.0046
ASN 5070.0055
LEU 5080.0048
THR 5090.0055
ILE 5100.0059
LEU 5110.0044
ASP 5120.0049
LEU 5130.0045
SER 5140.0058
ASN 5150.0064
ASN 5160.0068
ASN 5170.0074
ILE 5180.0066
ALA 5190.0069
ASN 5200.0063
ILE 5210.0064
ASN 5220.0056
ASP 5230.0054
ASP 5240.0047
MET 5250.0051
LEU 5260.0041
GLU 5270.0029
GLY 5280.0021
LEU 5290.0031
GLU 5300.0027
LYS 5310.0038
LEU 5320.0038
GLU 5330.0058
ILE 5340.0068
LEU 5350.0062
ASP 5360.0065
LEU 5370.0067
GLN 5380.0071
HIS 5390.0076
ASN 5400.0075
ASN 5410.0086
LEU 5420.0081
ALA 5430.0079
ARG 5440.0080
LEU 5450.0079
TRP 5460.0073
LYS 5470.0073
HIS 5480.0079
ALA 5490.0089
ASN 5500.0098
PRO 5510.0128
GLY 5520.0132
GLY 5530.0102
PRO 5540.0078
ILE 5550.0085
TYR 5560.0065
PHE 5570.0067
LEU 5580.0062
LYS 5590.0060
GLY 5600.0058
LEU 5610.0051
SER 5620.0051
HIS 5630.0052
LEU 5640.0054
HIS 5650.0057
ILE 5660.0060
LEU 5670.0060
ASN 5680.0058
LEU 5690.0058
GLU 5700.0058
SER 5710.0065
ASN 5720.0065
GLY 5730.0059
PHE 5740.0056
ASP 5750.0052
GLU 5760.0049
ILE 5770.0050
PRO 5780.0058
VAL 5790.0054
GLU 5800.0061
VAL 5810.0055
PHE 5820.0052
LYS 5830.0058
ASP 5840.0061
LEU 5850.0056
PHE 5860.0053
GLU 5870.0051
LEU 5880.0047
LYS 5890.0041
ILE 5900.0039
ILE 5910.0035
ASP 5920.0033
LEU 5930.0030
GLY 5940.0031
LEU 5950.0032
ASN 5960.0039
ASN 5970.0038
LEU 5980.0039
ASN 5990.0045
THR 6000.0049
LEU 6010.0037
PRO 6020.0045
ALA 6030.0044
SER 6040.0041
VAL 6050.0040
PHE 6060.0032
ASN 6070.0041
ASN 6080.0042
GLN 6090.0033
VAL 6100.0036
SER 6110.0032
LEU 6120.0019
LYS 6130.0019
SER 6140.0021
LEU 6150.0021
ASN 6160.0029
LEU 6170.0038
GLN 6180.0046
LYS 6190.0058
ASN 6200.0058
LEU 6210.0074
ILE 6220.0073
THR 6230.0068
SER 6240.0074
VAL 6250.0079
GLU 6260.0043
LYS 6270.0045
LYS 6280.0041
VAL 6290.0041
PHE 6300.0045
GLY 6310.0034
PRO 6320.0022
ALA 6330.0027
PHE 6340.0036
ARG 6350.0028
ASN 6360.0017
LEU 6370.0026
THR 6380.0034
GLU 6390.0041
LEU 6400.0044
ASP 6410.0051
MET 6420.0055
ARG 6430.0062
PHE 6440.0073
ASN 6450.0072
PRO 6460.0084
PHE 6470.0071
ASP 6480.0080
CYS 6490.0071
THR 6500.0098
CYS 6510.0131
GLU 6520.0153
SER 6530.0123
ILE 6540.0089
ALA 6550.0107
TRP 6560.0072
PHE 6570.0062
VAL 6580.0045
ASN 6590.0047
TRP 6600.0050
ILE 6610.0041
ASN 6620.0008
GLU 6630.0039
THR 6640.0098
HIS 6650.0149
THR 6660.0061
ASN 6670.0058
ILE 6680.0056
PRO 6690.0053
GLU 6700.0054
LEU 6710.0047
SER 6720.0046
SER 6730.0054
HIS 6740.0057
TYR 6750.0050
LEU 6760.0052
CYS 6770.0053
ASN 6780.0070
THR 6790.0089
PRO 6800.0085
PRO 6810.0070
HIS 6820.0071
TYR 6830.0056
HIS 6840.0044
GLY 6850.0048
PHE 6860.0035
PRO 6870.0033
VAL 6880.0038
ARG 6890.0035
LEU 6900.0055
PHE 6910.0077
ASP 6920.0155
THR 6930.0176
SER 6940.0260
SER 6950.0283
CYS 6960.0279
GLU 10.0041
ALA 20.0048
ALA 30.0051
ALA 40.0028
LYS 50.0042
MET 60.0073
GLN 70.0068
ARG 80.0038
LEU 90.0072
VAL 100.0096
LEU 110.0062
LEU 120.0046
LEU 130.0078
ALA 140.0078
ILE 150.0046
SER 160.0065
LEU 170.0090
LEU 180.0040
LEU 190.0058
TYR 200.0100
GLN 210.0067
ASP 220.0134
LEU 230.0216
PRO 240.0218
VAL 250.0226
ARG 260.0223
SER 270.0188
GLU 280.0140
PHE 290.0137
GLU 300.0122
LEU 310.0061
ASP 320.0055
ARG 330.0038
ILE 340.0049
CYS 350.0058
GLY 360.0307
TYR 370.0440
GLY 380.0320
THR 390.0291
ALA 400.0061
ARG 410.0045
CYS 420.0042
ARG 430.0035
LYS 440.0051
LYS 450.0050
CYS 460.0055
ARG 470.0094
SER 480.0147
GLN 490.0147
GLU 500.0103
TYR 510.0084
ARG 520.0047
ILE 530.0072
GLY 540.0061
ARG 550.0066
CYS 560.0061
PRO 570.0084
ASN 580.0085
THR 590.0068
TYR 600.0055
ALA 610.0018
CYS 620.0035
CYS 630.0043
LEU 640.0080
ARG 650.0103
LYS 660.0236
TRP 670.0236
ASP 680.0287
GLU 690.0237
SER 700.0353
LEU 710.0273
LEU 720.0106
ASN 730.0209
ARG 740.0199
THR 750.0064
LYS 760.0179
PRO 770.0169
GLU 780.0090
ALA 790.0229
ALA 800.0378
ALA 810.0284
LYS 820.0221
LYS 830.0129
GLU 840.0057
MET 850.0049
ASN 860.0134
LEU 870.0134
SER 880.0125
VAL 890.0125
GLY 900.0126
LEU 910.0102
GLY 920.0129
GLY 930.0123
GLY 940.0105
SER 950.0103
ASN 960.0131
LEU 970.0127
SER 980.0112
VAL 990.0119
GLY 1000.0110
LEU 1010.0144
GLY 1020.0240
GLU 1030.0250
ILE 1040.0341
GLY 1050.0362
GLY 1060.0186
GLY 1070.0221
SER 1080.0247
LYS 1090.0242
LEU 1100.0282
LEU 1110.0240
ASP 1120.0210
ILE 1130.0154
ASN 1140.0187
LEU 1150.0152
GLY 1160.0242
ARG 1170.0513
GLY 1180.0548
GLY 1190.0474
GLY 1200.0266
SER 1210.0128
MET 1220.0110
VAL 1230.0070
ASP 1240.0087
LEU 1250.0102
THR 1260.0106
PHE 1270.0086
GLY 1280.0072
GLY 1290.0051
VAL 1300.0037
GLY 1310.0032
GLY 1320.0037
GLY 1330.0044
SER 1340.0038
THR 1350.0038
PHE 1360.0042
THR 1370.0045
PHE 1380.0042
PHE 1390.0046
PRO 1400.0045
LEU 1410.0059
VAL 1420.0100
ILE 1430.0100
GLY 1440.0163
GLY 1450.0197
GLY 1460.0193
SER 1470.0178
ASP 1480.0161
ALA 1490.0127
MET 1500.0067
TYR 1510.0046
LEU 1520.0046
GLY 1530.0032
PHE 1540.0033
ALA 1550.0024
ALA 1560.0047
GLY 1570.0048
GLY 1580.0056
GLY 1590.0057
SER 1600.0056
ALA 1610.0104
GLY 1620.0099
GLY 1630.0110
GLU 1640.0103
ASN 1650.0083
HIS 1660.0092
VAL 1670.0092
ALA 1680.0101
PHE 1690.0132
GLY 1700.0157
PRO 1710.0209
GLY 1720.0224
PRO 1730.0225
GLY 1740.0214
VAL 1750.0191
ASP 1760.0093
LEU 1770.0044
THR 1780.0140
PHE 1790.0221
GLY 1800.0362
GLY 1810.0607
VAL 1820.0531
GLN 1830.0330
PHE 1840.0248
ALA 1850.0131
MET 1860.0273
VAL 1870.0199
ASN 1880.0162
ASN 1890.0181
GLY 1900.0148
PRO 1910.0466
GLY 1920.0332
PRO 1930.0333
GLY 1940.0350
GLU 1950.0149
SER 1960.0835
PHE 1970.0376
THR 1980.0383
ALA 1990.0425
GLN 2000.0380
PRO 2010.0376
ALA 2020.0213
ASP 2030.0358
MET 2040.0336
GLN 2050.0280
ALA 2060.0597
GLY 2070.0383
ILE 2080.0273
LYS 2090.0098
GLY 2100.0248
PRO 2110.0284
GLY 2120.0180
PRO 2130.0116
GLY 2140.0157
GLY 2150.0265
SER 2160.0096
ILE 2170.0180
GLN 2180.0082
VAL 2190.0132
ILE 2200.0069
ASN 2210.0248
GLY 2220.0207
SER 2230.0125
THR 2240.0159
ILE 2250.0106
GLY 2260.0070
THR 2270.0078
GLY 2280.0064
SER 2290.0094
LYS 2300.0072
LYS 2310.0082
THR 2320.0058
ILE 2330.0028
LEU 2340.0031
ILE 2350.0055
TYR 2360.0060
SER 2370.0063
ILE 2380.0059
ILE 2390.0051
GLY 2400.0051
VAL 2410.0065
LYS 2420.0056
LYS 2430.0059
GLY 2440.0054
THR 2450.0047
LEU 2460.0036
ALA 2470.0027
TRP 2480.0033
ALA 2490.0044
ARG 2500.0053
THR 2510.0049
GLY 2520.0025
PHE 2530.0016
SER 2540.0019
PRO 2550.0042
ALA 2560.0149
LYS 2570.0165
LYS 2580.0119
LEU 2590.0084
ASN 2600.0053
ALA 2610.0033
GLY 2620.0037
VAL 2630.0037
VAL 2640.0051
ARG 2650.0049
VAL 2660.0077
PHE 2670.0048
PHE 2680.0052
LEU 2690.0025
ASN 2700.0031
GLN 2710.0034
LYS 2720.0064
LYS 2730.0052
ALA 2740.0017
LYS 2750.0032
ASP 2760.0028
VAL 2770.0034
LEU 2780.0029
ARG 2790.0034
LYS 2800.0040
THR 2810.0050
SER 2820.0034
ARG 2830.0025
PRO 2840.0022
MET 2850.0052
VAL 2860.0079
ASP 2870.0060
LEU 2880.0019
THR 2890.0008
PHE 2900.0041
GLY 2910.0036
GLY 2920.0079

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.