CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 91  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0555
THR 260.0115
LYS 270.0096
CYS 280.0079
THR 290.0102
VAL 300.0087
SER 310.0076
HIS 320.0081
GLU 330.0069
VAL 340.0064
ALA 350.0054
ASP 360.0076
CYS 370.0068
SER 380.0074
HIS 390.0082
LEU 400.0081
LYS 410.0039
LEU 420.0058
THR 430.0092
GLN 440.0134
VAL 450.0132
PRO 460.0149
ASP 470.0200
ASP 480.0210
LEU 490.0159
PRO 500.0169
THR 510.0158
ASN 520.0125
ILE 530.0077
THR 540.0026
VAL 550.0023
LEU 560.0020
ASN 570.0029
LEU 580.0019
THR 590.0041
HIS 600.0042
ASN 610.0028
GLN 620.0054
LEU 630.0082
ARG 640.0123
ARG 650.0144
LEU 660.0162
PRO 670.0202
ALA 680.0217
ALA 690.0236
ASN 700.0196
PHE 710.0178
THR 720.0216
ARG 730.0200
TYR 740.0146
SER 750.0150
GLN 760.0091
LEU 770.0064
THR 780.0047
SER 790.0045
LEU 800.0056
ASP 810.0049
VAL 820.0058
GLY 830.0073
PHE 840.0075
ASN 850.0075
THR 860.0097
ILE 870.0112
SER 880.0141
LYS 890.0155
LEU 900.0149
GLU 910.0191
PRO 920.0194
GLU 930.0193
LEU 940.0164
CYS 950.0154
GLN 960.0186
LYS 970.0174
LEU 980.0134
PRO 990.0128
MET 1000.0088
LEU 1010.0074
LYS 1020.0074
VAL 1030.0068
LEU 1040.0077
ASN 1050.0073
LEU 1060.0079
GLN 1070.0081
HIS 1080.0086
ASN 1090.0090
GLU 1100.0103
LEU 1110.0082
SER 1120.0080
GLN 1130.0086
LEU 1140.0095
SER 1150.0100
ASP 1160.0136
LYS 1170.0133
THR 1180.0124
PHE 1190.0117
ALA 1200.0123
PHE 1210.0140
CYS 1220.0111
THR 1230.0111
ASN 1240.0080
LEU 1250.0080
THR 1260.0078
GLU 1270.0072
LEU 1280.0067
HIS 1290.0061
LEU 1300.0057
MET 1310.0060
SER 1320.0057
ASN 1330.0054
SER 1340.0047
ILE 1350.0044
GLN 1360.0027
LYS 1370.0026
ILE 1380.0041
LYS 1390.0059
ASN 1400.0082
ASN 1410.0083
PRO 1420.0079
PHE 1430.0079
VAL 1440.0086
LYS 1450.0087
GLN 1460.0079
LYS 1470.0086
ASN 1480.0075
LEU 1490.0071
ILE 1500.0071
THR 1510.0052
LEU 1520.0039
ASP 1530.0034
LEU 1540.0021
SER 1550.0027
HIS 1560.0038
ASN 1570.0022
GLY 1580.0029
LEU 1590.0028
SER 1600.0046
SER 1610.0046
THR 1620.0024
LYS 1630.0019
LEU 1640.0031
GLY 1650.0048
THR 1660.0090
GLN 1670.0085
VAL 1680.0078
GLN 1690.0063
LEU 1700.0052
GLU 1710.0074
ASN 1720.0068
LEU 1730.0046
GLN 1740.0048
GLU 1750.0032
LEU 1760.0026
LEU 1770.0031
LEU 1780.0034
SER 1790.0044
ASN 1800.0051
ASN 1810.0054
LYS 1820.0070
ILE 1830.0078
GLN 1840.0099
ALA 1850.0105
LEU 1860.0094
LYS 1870.0085
SER 1880.0063
GLU 1890.0072
GLU 1900.0071
LEU 1910.0039
ASP 1920.0039
ILE 1930.0044
PHE 1940.0024
ALA 1950.0028
ASN 1960.0055
SER 1970.0038
SER 1980.0041
LEU 1990.0033
LYS 2000.0049
LYS 2010.0045
LEU 2020.0045
GLU 2030.0053
LEU 2040.0059
SER 2050.0068
SER 2060.0079
ASN 2070.0085
GLN 2080.0099
ILE 2090.0101
LYS 2100.0115
GLU 2110.0129
PHE 2120.0118
SER 2130.0107
PRO 2140.0095
GLY 2150.0087
CYS 2160.0095
PHE 2170.0074
HIS 2180.0058
ALA 2190.0061
ILE 2200.0045
GLY 2210.0037
ARG 2220.0045
LEU 2230.0051
PHE 2240.0063
GLY 2250.0069
LEU 2260.0068
PHE 2270.0074
LEU 2280.0081
ASN 2290.0086
ASN 2300.0093
VAL 2310.0112
GLN 2320.0111
LEU 2330.0121
GLY 2340.0117
PRO 2350.0125
SER 2360.0140
LEU 2370.0142
THR 2380.0143
GLU 2390.0146
LYS 2400.0148
LEU 2410.0131
CYS 2420.0129
LEU 2430.0130
GLU 2440.0129
LEU 2450.0126
ALA 2460.0130
ASN 2470.0127
THR 2480.0114
SER 2490.0093
ILE 2500.0081
ARG 2510.0085
ASN 2520.0083
LEU 2530.0087
SER 2540.0085
LEU 2550.0090
SER 2560.0089
ASN 2570.0090
SER 2580.0109
GLN 2590.0105
LEU 2600.0111
SER 2610.0113
THR 2620.0125
THR 2630.0135
SER 2640.0156
ASN 2650.0170
THR 2660.0172
THR 2670.0157
PHE 2680.0147
LEU 2690.0164
GLY 2700.0167
LEU 2710.0140
LYS 2720.0144
TRP 2730.0149
THR 2740.0128
ASN 2750.0103
LEU 2760.0094
THR 2770.0077
MET 2780.0076
LEU 2790.0084
ASP 2800.0082
LEU 2810.0083
SER 2820.0069
TYR 2830.0072
ASN 2840.0089
ASN 2850.0085
LEU 2860.0089
ASN 2870.0094
VAL 2880.0111
VAL 2890.0113
GLY 2900.0135
ASN 2910.0154
ASP 2920.0152
SER 2930.0142
PHE 2940.0123
ALA 2950.0138
TRP 2960.0143
LEU 2970.0112
PRO 2980.0099
GLN 2990.0079
LEU 3000.0068
GLU 3010.0034
TYR 3020.0039
PHE 3030.0044
PHE 3040.0045
LEU 3050.0048
GLU 3060.0042
TYR 3070.0045
ASN 3080.0059
ASN 3090.0068
ILE 3100.0075
GLN 3110.0072
HIS 3120.0084
LEU 3130.0076
PHE 3140.0102
SER 3150.0110
HIS 3160.0137
SER 3170.0111
LEU 3180.0086
HIS 3190.0114
GLY 3200.0109
LEU 3210.0072
PHE 3220.0065
ASN 3230.0032
VAL 3240.0019
ARG 3250.0018
TYR 3260.0026
LEU 3270.0012
ASN 3280.0018
LEU 3290.0011
LYS 3300.0024
ARG 3310.0017
SER 3320.0029
PHE 3330.0036
THR 3340.0062
LYS 3350.0068
GLN 3360.0105
SER 3370.0124
ILE 3380.0188
SER 3390.0211
LEU 3400.0155
ALA 3410.0094
SER 3420.0088
LEU 3430.0059
PRO 3440.0056
LYS 3450.0082
ILE 3460.0071
ASP 3470.0088
ASP 3480.0098
PHE 3490.0090
SER 3500.0071
PHE 3510.0069
GLN 3520.0094
TRP 3530.0077
LEU 3540.0046
LYS 3550.0063
CYS 3560.0055
LEU 3570.0054
GLU 3580.0072
HIS 3590.0069
LEU 3600.0060
ASN 3610.0057
MET 3620.0052
GLU 3630.0057
ASP 3640.0052
ASN 3650.0043
ASP 3660.0050
ILE 3670.0054
PRO 3680.0060
GLY 3690.0072
ILE 3700.0080
LYS 3710.0080
SER 3720.0094
ASN 3730.0085
MET 3740.0070
PHE 3750.0074
THR 3760.0094
GLY 3770.0090
LEU 3780.0084
ILE 3790.0096
ASN 3800.0090
LEU 3810.0094
LYS 3820.0100
TYR 3830.0096
LEU 3840.0091
SER 3850.0088
LEU 3860.0083
SER 3870.0086
ASN 3880.0087
SER 3890.0084
PHE 3900.0086
THR 3910.0122
SER 3920.0110
LEU 3930.0102
ARG 3940.0095
THR 3950.0095
LEU 3960.0105
THR 3970.0126
ASN 3980.0110
GLU 3990.0125
THR 4000.0120
PHE 4010.0089
VAL 4020.0092
SER 4030.0098
LEU 4040.0094
ALA 4050.0093
HIS 4060.0100
SER 4070.0096
PRO 4080.0100
LEU 4090.0093
HIS 4100.0094
ILE 4110.0082
LEU 4120.0085
ASN 4130.0087
LEU 4140.0088
THR 4150.0085
LYS 4160.0093
ASN 4170.0105
LYS 4180.0103
ILE 4190.0094
SER 4200.0097
LYS 4210.0099
ILE 4220.0097
GLU 4230.0129
SER 4240.0138
ASP 4250.0132
ALA 4260.0096
PHE 4270.0070
SER 4280.0068
TRP 4290.0069
LEU 4300.0051
GLY 4310.0057
HIS 4320.0049
LEU 4330.0046
GLU 4340.0033
VAL 4350.0038
LEU 4360.0034
ASP 4370.0047
LEU 4380.0050
GLY 4390.0045
LEU 4400.0065
ASN 4410.0080
GLU 4420.0084
ILE 4430.0080
GLY 4440.0093
GLN 4450.0116
GLU 4460.0159
LEU 4470.0142
THR 4480.0175
GLY 4490.0150
GLN 4500.0160
GLU 4510.0121
TRP 4520.0092
ARG 4530.0113
GLY 4540.0091
LEU 4550.0055
GLU 4560.0065
ASN 4570.0034
ILE 4580.0030
PHE 4590.0042
GLU 4600.0035
ILE 4610.0027
TYR 4620.0017
LEU 4630.0021
SER 4640.0017
TYR 4650.0023
ASN 4660.0035
LYS 4670.0051
TYR 4680.0072
LEU 4690.0093
GLN 4700.0135
LEU 4710.0151
THR 4720.0187
ARG 4730.0209
ASN 4740.0196
SER 4750.0158
PHE 4760.0130
ALA 4770.0158
LEU 4780.0139
VAL 4790.0110
PRO 4800.0129
SER 4810.0094
LEU 4820.0085
GLN 4830.0090
ARG 4840.0080
LEU 4850.0075
MET 4860.0057
LEU 4870.0057
ARG 4880.0051
ARG 4890.0037
VAL 4900.0041
ALA 4910.0066
LEU 4920.0093
LYS 4930.0128
ASN 4940.0165
VAL 4950.0161
ASP 4960.0173
SER 4970.0191
SER 4980.0228
PRO 4990.0229
SER 5000.0195
PRO 5010.0164
PHE 5020.0151
GLN 5030.0165
PRO 5040.0151
LEU 5050.0132
ARG 5060.0119
ASN 5070.0107
LEU 5080.0105
THR 5090.0105
ILE 5100.0100
LEU 5110.0091
ASP 5120.0080
LEU 5130.0083
SER 5140.0079
ASN 5150.0068
ASN 5160.0075
ASN 5170.0087
ILE 5180.0103
ALA 5190.0120
ASN 5200.0136
ILE 5210.0150
ASN 5220.0164
ASP 5230.0177
ASP 5240.0181
MET 5250.0169
LEU 5260.0139
GLU 5270.0137
GLY 5280.0119
LEU 5290.0112
GLU 5300.0102
LYS 5310.0085
LEU 5320.0080
GLU 5330.0080
ILE 5340.0075
LEU 5350.0071
ASP 5360.0061
LEU 5370.0069
GLN 5380.0069
HIS 5390.0071
ASN 5400.0076
ASN 5410.0094
LEU 5420.0105
ALA 5430.0120
ARG 5440.0136
LEU 5450.0136
TRP 5460.0132
LYS 5470.0158
HIS 5480.0179
ALA 5490.0199
ASN 5500.0186
PRO 5510.0221
GLY 5520.0219
GLY 5530.0200
PRO 5540.0170
ILE 5550.0152
TYR 5560.0125
PHE 5570.0124
LEU 5580.0117
LYS 5590.0112
GLY 5600.0106
LEU 5610.0070
SER 5620.0063
HIS 5630.0052
LEU 5640.0055
HIS 5650.0050
ILE 5660.0041
LEU 5670.0040
ASN 5680.0037
LEU 5690.0039
GLU 5700.0040
SER 5710.0056
ASN 5720.0060
GLY 5730.0072
PHE 5740.0071
ASP 5750.0081
GLU 5760.0098
ILE 5770.0082
PRO 5780.0092
VAL 5790.0086
GLU 5800.0084
VAL 5810.0079
PHE 5820.0065
LYS 5830.0070
ASP 5840.0064
LEU 5850.0051
PHE 5860.0032
GLU 5870.0031
LEU 5880.0027
LYS 5890.0023
ILE 5900.0022
ILE 5910.0006
ASP 5920.0009
LEU 5930.0010
GLY 5940.0017
LEU 5950.0024
ASN 5960.0027
ASN 5970.0020
LEU 5980.0017
ASN 5990.0009
THR 6000.0010
LEU 6010.0047
PRO 6020.0043
ALA 6030.0039
SER 6040.0035
VAL 6050.0035
PHE 6060.0031
ASN 6070.0033
ASN 6080.0037
GLN 6090.0034
VAL 6100.0033
SER 6110.0031
LEU 6120.0033
LYS 6130.0045
SER 6140.0056
LEU 6150.0050
ASN 6160.0043
LEU 6170.0037
GLN 6180.0052
LYS 6190.0054
ASN 6200.0038
LEU 6210.0038
ILE 6220.0056
THR 6230.0063
SER 6240.0084
VAL 6250.0092
GLU 6260.0051
LYS 6270.0051
LYS 6280.0052
VAL 6290.0053
PHE 6300.0053
GLY 6310.0047
PRO 6320.0050
ALA 6330.0069
PHE 6340.0070
ARG 6350.0058
ASN 6360.0059
LEU 6370.0075
THR 6380.0098
GLU 6390.0109
LEU 6400.0100
ASP 6410.0090
MET 6420.0082
ARG 6430.0091
PHE 6440.0089
ASN 6450.0077
PRO 6460.0089
PHE 6470.0099
ASP 6480.0110
CYS 6490.0114
THR 6500.0130
CYS 6510.0131
GLU 6520.0126
SER 6530.0108
ILE 6540.0118
ALA 6550.0141
TRP 6560.0094
PHE 6570.0113
VAL 6580.0128
ASN 6590.0117
TRP 6600.0119
ILE 6610.0143
ASN 6620.0166
GLU 6630.0180
THR 6640.0229
HIS 6650.0307
THR 6660.0133
ASN 6670.0131
ILE 6680.0128
PRO 6690.0126
GLU 6700.0123
LEU 6710.0120
SER 6720.0121
SER 6730.0121
HIS 6740.0119
TYR 6750.0118
LEU 6760.0126
CYS 6770.0130
ASN 6780.0137
THR 6790.0147
PRO 6800.0152
PRO 6810.0174
HIS 6820.0162
TYR 6830.0148
HIS 6840.0156
GLY 6850.0153
PHE 6860.0145
PRO 6870.0142
VAL 6880.0139
ARG 6890.0139
LEU 6900.0139
PHE 6910.0107
ASP 6920.0166
THR 6930.0237
SER 6940.0299
SER 6950.0302
CYS 6960.0353
GLU 10.0450
ALA 20.0350
ALA 30.0077
ALA 40.0121
LYS 50.0218
MET 60.0183
GLN 70.0135
ARG 80.0110
LEU 90.0199
VAL 100.0236
LEU 110.0137
LEU 120.0123
LEU 130.0170
ALA 140.0162
ILE 150.0110
SER 160.0147
LEU 170.0180
LEU 180.0100
LEU 190.0060
TYR 200.0138
GLN 210.0076
ASP 220.0108
LEU 230.0187
PRO 240.0177
VAL 250.0160
ARG 260.0142
SER 270.0110
GLU 280.0076
PHE 290.0049
GLU 300.0066
LEU 310.0047
ASP 320.0043
ARG 330.0045
ILE 340.0052
CYS 350.0054
GLY 360.0026
TYR 370.0049
GLY 380.0045
THR 390.0053
ALA 400.0045
ARG 410.0046
CYS 420.0060
ARG 430.0076
LYS 440.0105
LYS 450.0107
CYS 460.0129
ARG 470.0136
SER 480.0223
GLN 490.0215
GLU 500.0151
TYR 510.0109
ARG 520.0090
ILE 530.0066
GLY 540.0069
ARG 550.0075
CYS 560.0081
PRO 570.0085
ASN 580.0093
THR 590.0083
TYR 600.0089
ALA 610.0104
CYS 620.0053
CYS 630.0061
LEU 640.0091
ARG 650.0164
LYS 660.0353
TRP 670.0388
ASP 680.0452
GLU 690.0506
SER 700.0555
LEU 710.0442
LEU 720.0362
ASN 730.0372
ARG 740.0357
THR 750.0301
LYS 760.0218
PRO 770.0216
GLU 780.0261
ALA 790.0401
ALA 800.0434
ALA 810.0072
LYS 820.0051
LYS 830.0061
GLU 840.0046
MET 850.0068
ASN 860.0052
LEU 870.0041
SER 880.0033
VAL 890.0029
GLY 900.0024
LEU 910.0045
GLY 920.0083
GLY 930.0130
GLY 940.0109
SER 950.0088
ASN 960.0041
LEU 970.0048
SER 980.0053
VAL 990.0058
GLY 1000.0071
LEU 1010.0067
GLY 1020.0063
GLU 1030.0057
ILE 1040.0045
GLY 1050.0039
GLY 1060.0080
GLY 1070.0071
SER 1080.0071
LYS 1090.0039
LEU 1100.0045
LEU 1110.0056
ASP 1120.0071
ILE 1130.0053
ASN 1140.0076
LEU 1150.0059
GLY 1160.0120
ARG 1170.0130
GLY 1180.0126
GLY 1190.0087
GLY 1200.0048
SER 1210.0009
MET 1220.0014
VAL 1230.0010
ASP 1240.0017
LEU 1250.0017
THR 1260.0024
PHE 1270.0020
GLY 1280.0019
GLY 1290.0016
VAL 1300.0013
GLY 1310.0033
GLY 1320.0038
GLY 1330.0032
SER 1340.0040
THR 1350.0039
PHE 1360.0042
THR 1370.0044
PHE 1380.0041
PHE 1390.0043
PRO 1400.0042
LEU 1410.0063
VAL 1420.0086
ILE 1430.0083
GLY 1440.0108
GLY 1450.0123
GLY 1460.0145
SER 1470.0114
ASP 1480.0079
ALA 1490.0068
MET 1500.0047
TYR 1510.0032
LEU 1520.0026
GLY 1530.0033
PHE 1540.0034
ALA 1550.0048
ALA 1560.0056
GLY 1570.0049
GLY 1580.0041
GLY 1590.0033
SER 1600.0029
ALA 1610.0013
GLY 1620.0019
GLY 1630.0023
GLU 1640.0027
ASN 1650.0025
HIS 1660.0027
VAL 1670.0022
ALA 1680.0027
PHE 1690.0024
GLY 1700.0031
PRO 1710.0099
GLY 1720.0097
PRO 1730.0089
GLY 1740.0050
VAL 1750.0028
ASP 1760.0033
LEU 1770.0024
THR 1780.0031
PHE 1790.0027
GLY 1800.0035
GLY 1810.0065
VAL 1820.0061
GLN 1830.0053
PHE 1840.0039
ALA 1850.0039
MET 1860.0040
VAL 1870.0048
ASN 1880.0060
ASN 1890.0074
GLY 1900.0083
PRO 1910.0102
GLY 1920.0083
PRO 1930.0040
GLY 1940.0033
GLU 1950.0051
SER 1960.0061
PHE 1970.0083
THR 1980.0059
ALA 1990.0065
GLN 2000.0043
PRO 2010.0063
ALA 2020.0102
ASP 2030.0100
MET 2040.0052
GLN 2050.0109
ALA 2060.0143
GLY 2070.0154
ILE 2080.0129
LYS 2090.0120
GLY 2100.0157
PRO 2110.0120
GLY 2120.0110
PRO 2130.0063
GLY 2140.0074
GLY 2150.0121
SER 2160.0068
ILE 2170.0091
GLN 2180.0063
VAL 2190.0073
ILE 2200.0071
ASN 2210.0098
GLY 2220.0105
SER 2230.0107
THR 2240.0090
ILE 2250.0099
GLY 2260.0133
THR 2270.0121
GLY 2280.0083
SER 2290.0077
LYS 2300.0059
LYS 2310.0058
THR 2320.0055
ILE 2330.0024
LEU 2340.0027
ILE 2350.0028
TYR 2360.0039
SER 2370.0031
ILE 2380.0029
ILE 2390.0022
GLY 2400.0038
VAL 2410.0095
LYS 2420.0080
LYS 2430.0057
GLY 2440.0026
THR 2450.0029
LEU 2460.0028
ALA 2470.0020
TRP 2480.0018
ALA 2490.0019
ARG 2500.0027
THR 2510.0098
GLY 2520.0084
PHE 2530.0073
SER 2540.0064
PRO 2550.0049
ALA 2560.0060
LYS 2570.0078
LYS 2580.0051
LEU 2590.0062
ASN 2600.0072
ALA 2610.0071
GLY 2620.0044
VAL 2630.0057
VAL 2640.0060
ARG 2650.0092
VAL 2660.0061
PHE 2670.0053
PHE 2680.0022
LEU 2690.0028
ASN 2700.0036
GLN 2710.0026
LYS 2720.0040
LYS 2730.0052
ALA 2740.0040
LYS 2750.0033
ASP 2760.0021
VAL 2770.0038
LEU 2780.0049
ARG 2790.0039
LYS 2800.0024
THR 2810.0038
SER 2820.0051
ARG 2830.0020
PRO 2840.0025
MET 2850.0035
VAL 2860.0044
ASP 2870.0046
LEU 2880.0029
THR 2890.0027
PHE 2900.0027
GLY 2910.0040
GLY 2920.0038

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.