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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 96  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0705
THR 260.0051
LYS 270.0051
CYS 280.0054
THR 290.0060
VAL 300.0065
SER 310.0072
HIS 320.0082
GLU 330.0068
VAL 340.0063
ALA 350.0047
ASP 360.0050
CYS 370.0041
SER 380.0042
HIS 390.0038
LEU 400.0032
LYS 410.0049
LEU 420.0044
THR 430.0044
GLN 440.0042
VAL 450.0039
PRO 460.0043
ASP 470.0043
ASP 480.0043
LEU 490.0042
PRO 500.0044
THR 510.0040
ASN 520.0044
ILE 530.0040
THR 540.0043
VAL 550.0042
LEU 560.0041
ASN 570.0041
LEU 580.0037
THR 590.0043
HIS 600.0044
ASN 610.0044
GLN 620.0044
LEU 630.0035
ARG 640.0033
ARG 650.0032
LEU 660.0024
PRO 670.0031
ALA 680.0035
ALA 690.0042
ASN 700.0037
PHE 710.0034
THR 720.0039
ARG 730.0039
TYR 740.0033
SER 750.0036
GLN 760.0034
LEU 770.0028
THR 780.0027
SER 790.0024
LEU 800.0023
ASP 810.0031
VAL 820.0030
GLY 830.0033
PHE 840.0036
ASN 850.0032
THR 860.0027
ILE 870.0020
SER 880.0019
LYS 890.0022
LEU 900.0021
GLU 910.0020
PRO 920.0029
GLU 930.0028
LEU 940.0016
CYS 950.0024
GLN 960.0035
LYS 970.0031
LEU 980.0024
PRO 990.0029
MET 1000.0024
LEU 1010.0030
LYS 1020.0039
VAL 1030.0037
LEU 1040.0032
ASN 1050.0030
LEU 1060.0034
GLN 1070.0038
HIS 1080.0038
ASN 1090.0033
GLU 1100.0034
LEU 1110.0053
SER 1120.0051
GLN 1130.0051
LEU 1140.0052
SER 1150.0054
ASP 1160.0048
LYS 1170.0048
THR 1180.0047
PHE 1190.0048
ALA 1200.0049
PHE 1210.0045
CYS 1220.0044
THR 1230.0051
ASN 1240.0050
LEU 1250.0048
THR 1260.0057
GLU 1270.0056
LEU 1280.0055
HIS 1290.0054
LEU 1300.0053
MET 1310.0056
SER 1320.0058
ASN 1330.0060
SER 1340.0060
ILE 1350.0057
GLN 1360.0062
LYS 1370.0061
ILE 1380.0061
LYS 1390.0064
ASN 1400.0065
ASN 1410.0060
PRO 1420.0064
PHE 1430.0055
VAL 1440.0051
LYS 1450.0056
GLN 1460.0058
LYS 1470.0056
ASN 1480.0057
LEU 1490.0054
ILE 1500.0051
THR 1510.0054
LEU 1520.0055
ASP 1530.0058
LEU 1540.0058
SER 1550.0057
HIS 1560.0062
ASN 1570.0064
GLY 1580.0062
LEU 1590.0055
SER 1600.0048
SER 1610.0052
THR 1620.0040
LYS 1630.0054
LEU 1640.0060
GLY 1650.0069
THR 1660.0066
GLN 1670.0068
VAL 1680.0056
GLN 1690.0049
LEU 1700.0040
GLU 1710.0037
ASN 1720.0038
LEU 1730.0036
GLN 1740.0033
GLU 1750.0038
LEU 1760.0030
LEU 1770.0039
LEU 1780.0035
SER 1790.0039
ASN 1800.0045
ASN 1810.0045
LYS 1820.0039
ILE 1830.0031
GLN 1840.0036
ALA 1850.0052
LEU 1860.0055
LYS 1870.0077
SER 1880.0083
GLU 1890.0093
GLU 1900.0072
LEU 1910.0050
ASP 1920.0066
ILE 1930.0058
PHE 1940.0035
ALA 1950.0050
ASN 1960.0039
SER 1970.0026
SER 1980.0027
LEU 1990.0027
LYS 2000.0043
LYS 2010.0039
LEU 2020.0027
GLU 2030.0029
LEU 2040.0022
SER 2050.0030
SER 2060.0026
ASN 2070.0017
GLN 2080.0022
ILE 2090.0033
LYS 2100.0049
GLU 2110.0066
PHE 2120.0070
SER 2130.0087
PRO 2140.0103
GLY 2150.0098
CYS 2160.0072
PHE 2170.0064
HIS 2180.0074
ALA 2190.0066
ILE 2200.0049
GLY 2210.0053
ARG 2220.0054
LEU 2230.0052
PHE 2240.0061
GLY 2250.0058
LEU 2260.0047
PHE 2270.0043
LEU 2280.0039
ASN 2290.0040
ASN 2300.0034
VAL 2310.0034
GLN 2320.0037
LEU 2330.0043
GLY 2340.0048
PRO 2350.0055
SER 2360.0066
LEU 2370.0061
THR 2380.0064
GLU 2390.0072
LYS 2400.0069
LEU 2410.0070
CYS 2420.0078
LEU 2430.0083
GLU 2440.0077
LEU 2450.0076
ALA 2460.0079
ASN 2470.0080
THR 2480.0070
SER 2490.0069
ILE 2500.0066
ARG 2510.0062
ASN 2520.0057
LEU 2530.0051
SER 2540.0047
LEU 2550.0042
SER 2560.0034
ASN 2570.0035
SER 2580.0035
GLN 2590.0037
LEU 2600.0038
SER 2610.0032
THR 2620.0033
THR 2630.0037
SER 2640.0037
ASN 2650.0040
THR 2660.0051
THR 2670.0050
PHE 2680.0056
LEU 2690.0058
GLY 2700.0060
LEU 2710.0064
LYS 2720.0067
TRP 2730.0064
THR 2740.0060
ASN 2750.0060
LEU 2760.0039
THR 2770.0040
MET 2780.0038
LEU 2790.0035
ASP 2800.0033
LEU 2810.0022
SER 2820.0023
TYR 2830.0024
ASN 2840.0024
ASN 2850.0025
LEU 2860.0021
ASN 2870.0020
VAL 2880.0022
VAL 2890.0026
GLY 2900.0027
ASN 2910.0029
ASP 2920.0030
SER 2930.0032
PHE 2940.0037
ALA 2950.0034
TRP 2960.0039
LEU 2970.0035
PRO 2980.0032
GLN 2990.0028
LEU 3000.0030
GLU 3010.0022
TYR 3020.0022
PHE 3030.0020
PHE 3040.0020
LEU 3050.0017
GLU 3060.0014
TYR 3070.0014
ASN 3080.0013
ASN 3090.0013
ILE 3100.0013
GLN 3110.0015
HIS 3120.0017
LEU 3130.0021
PHE 3140.0024
SER 3150.0028
HIS 3160.0028
SER 3170.0027
LEU 3180.0029
HIS 3190.0030
GLY 3200.0031
LEU 3210.0024
PHE 3220.0024
ASN 3230.0025
VAL 3240.0025
ARG 3250.0026
TYR 3260.0021
LEU 3270.0017
ASN 3280.0015
LEU 3290.0012
LYS 3300.0011
ARG 3310.0007
SER 3320.0008
PHE 3330.0007
THR 3340.0006
LYS 3350.0004
GLN 3360.0017
SER 3370.0017
ILE 3380.0020
SER 3390.0017
LEU 3400.0012
ALA 3410.0009
SER 3420.0011
LEU 3430.0009
PRO 3440.0013
LYS 3450.0015
ILE 3460.0018
ASP 3470.0020
ASP 3480.0021
PHE 3490.0025
SER 3500.0025
PHE 3510.0024
GLN 3520.0026
TRP 3530.0030
LEU 3540.0031
LYS 3550.0032
CYS 3560.0030
LEU 3570.0028
GLU 3580.0028
HIS 3590.0028
LEU 3600.0025
ASN 3610.0022
MET 3620.0019
GLU 3630.0022
ASP 3640.0023
ASN 3650.0020
ASP 3660.0022
ILE 3670.0026
PRO 3680.0022
GLY 3690.0028
ILE 3700.0035
LYS 3710.0020
SER 3720.0020
ASN 3730.0022
MET 3740.0025
PHE 3750.0030
THR 3760.0025
GLY 3770.0028
LEU 3780.0030
ILE 3790.0030
ASN 3800.0033
LEU 3810.0028
LYS 3820.0032
TYR 3830.0035
LEU 3840.0031
SER 3850.0034
LEU 3860.0034
SER 3870.0036
ASN 3880.0038
SER 3890.0037
PHE 3900.0037
THR 3910.0054
SER 3920.0053
LEU 3930.0055
ARG 3940.0054
THR 3950.0058
LEU 3960.0067
THR 3970.0069
ASN 3980.0064
GLU 3990.0068
THR 4000.0067
PHE 4010.0051
VAL 4020.0046
SER 4030.0047
LEU 4040.0048
ALA 4050.0044
HIS 4060.0032
SER 4070.0034
PRO 4080.0036
LEU 4090.0038
HIS 4100.0040
ILE 4110.0040
LEU 4120.0042
ASN 4130.0043
LEU 4140.0044
THR 4150.0045
LYS 4160.0049
ASN 4170.0055
LYS 4180.0056
ILE 4190.0055
SER 4200.0058
LYS 4210.0068
ILE 4220.0068
GLU 4230.0075
SER 4240.0076
ASP 4250.0075
ALA 4260.0065
PHE 4270.0059
SER 4280.0056
TRP 4290.0056
LEU 4300.0053
GLY 4310.0049
HIS 4320.0046
LEU 4330.0044
GLU 4340.0039
VAL 4350.0038
LEU 4360.0042
ASP 4370.0040
LEU 4380.0043
GLY 4390.0036
LEU 4400.0037
ASN 4410.0050
GLU 4420.0056
ILE 4430.0057
GLY 4440.0064
GLN 4450.0070
GLU 4460.0080
LEU 4470.0070
THR 4480.0080
GLY 4490.0067
GLN 4500.0077
GLU 4510.0071
TRP 4520.0060
ARG 4530.0065
GLY 4540.0062
LEU 4550.0052
GLU 4560.0047
ASN 4570.0040
ILE 4580.0035
PHE 4590.0024
GLU 4600.0022
ILE 4610.0028
TYR 4620.0022
LEU 4630.0024
SER 4640.0012
TYR 4650.0012
ASN 4660.0032
LYS 4670.0044
TYR 4680.0052
LEU 4690.0050
GLN 4700.0063
LEU 4710.0060
THR 4720.0073
ARG 4730.0074
ASN 4740.0070
SER 4750.0058
PHE 4760.0046
ALA 4770.0055
LEU 4780.0055
VAL 4790.0039
PRO 4800.0030
SER 4810.0026
LEU 4820.0019
GLN 4830.0012
ARG 4840.0013
LEU 4850.0017
MET 4860.0021
LEU 4870.0026
ARG 4880.0029
ARG 4890.0028
VAL 4900.0027
ALA 4910.0039
LEU 4920.0038
LYS 4930.0056
ASN 4940.0064
VAL 4950.0054
ASP 4960.0050
SER 4970.0061
SER 4980.0079
PRO 4990.0074
SER 5000.0053
PRO 5010.0048
PHE 5020.0039
GLN 5030.0046
PRO 5040.0038
LEU 5050.0027
ARG 5060.0030
ASN 5070.0015
LEU 5080.0027
THR 5090.0032
ILE 5100.0042
LEU 5110.0042
ASP 5120.0045
LEU 5130.0048
SER 5140.0054
ASN 5150.0057
ASN 5160.0059
ASN 5170.0054
ILE 5180.0050
ALA 5190.0047
ASN 5200.0044
ILE 5210.0045
ASN 5220.0047
ASP 5230.0050
ASP 5240.0053
MET 5250.0050
LEU 5260.0051
GLU 5270.0052
GLY 5280.0048
LEU 5290.0045
GLU 5300.0047
LYS 5310.0038
LEU 5320.0044
GLU 5330.0047
ILE 5340.0052
LEU 5350.0054
ASP 5360.0054
LEU 5370.0052
GLN 5380.0054
HIS 5390.0059
ASN 5400.0060
ASN 5410.0068
LEU 5420.0058
ALA 5430.0052
ARG 5440.0070
LEU 5450.0063
TRP 5460.0059
LYS 5470.0086
HIS 5480.0114
ALA 5490.0140
ASN 5500.0133
PRO 5510.0191
GLY 5520.0179
GLY 5530.0132
PRO 5540.0071
ILE 5550.0055
TYR 5560.0033
PHE 5570.0047
LEU 5580.0038
LYS 5590.0029
GLY 5600.0039
LEU 5610.0047
SER 5620.0047
HIS 5630.0051
LEU 5640.0047
HIS 5650.0047
ILE 5660.0045
LEU 5670.0036
ASN 5680.0038
LEU 5690.0032
GLU 5700.0030
SER 5710.0036
ASN 5720.0042
GLY 5730.0041
PHE 5740.0036
ASP 5750.0050
GLU 5760.0058
ILE 5770.0043
PRO 5780.0051
VAL 5790.0052
GLU 5800.0034
VAL 5810.0014
PHE 5820.0003
LYS 5830.0004
ASP 5840.0012
LEU 5850.0022
PHE 5860.0027
GLU 5870.0040
LEU 5880.0031
LYS 5890.0040
ILE 5900.0036
ILE 5910.0020
ASP 5920.0016
LEU 5930.0009
GLY 5940.0010
LEU 5950.0012
ASN 5960.0019
ASN 5970.0032
LEU 5980.0039
ASN 5990.0051
THR 6000.0064
LEU 6010.0059
PRO 6020.0068
ALA 6030.0074
SER 6040.0065
VAL 6050.0048
PHE 6060.0040
ASN 6070.0048
ASN 6080.0032
GLN 6090.0034
VAL 6100.0048
SER 6110.0049
LEU 6120.0043
LYS 6130.0051
SER 6140.0042
LEU 6150.0036
ASN 6160.0037
LEU 6170.0036
GLN 6180.0034
LYS 6190.0035
ASN 6200.0037
LEU 6210.0041
ILE 6220.0044
THR 6230.0040
SER 6240.0045
VAL 6250.0050
GLU 6260.0062
LYS 6270.0068
LYS 6280.0073
VAL 6290.0066
PHE 6300.0063
GLY 6310.0068
PRO 6320.0068
ALA 6330.0057
PHE 6340.0059
ARG 6350.0071
ASN 6360.0066
LEU 6370.0054
THR 6380.0054
GLU 6390.0043
LEU 6400.0038
ASP 6410.0047
MET 6420.0042
ARG 6430.0046
PHE 6440.0047
ASN 6450.0041
PRO 6460.0033
PHE 6470.0024
ASP 6480.0008
CYS 6490.0015
THR 6500.0020
CYS 6510.0028
GLU 6520.0007
SER 6530.0015
ILE 6540.0029
ALA 6550.0044
TRP 6560.0036
PHE 6570.0044
VAL 6580.0047
ASN 6590.0046
TRP 6600.0052
ILE 6610.0042
ASN 6620.0039
GLU 6630.0021
THR 6640.0021
HIS 6650.0029
THR 6660.0018
ASN 6670.0031
ILE 6680.0038
PRO 6690.0058
GLU 6700.0071
LEU 6710.0061
SER 6720.0063
SER 6730.0067
HIS 6740.0059
TYR 6750.0045
LEU 6760.0043
CYS 6770.0019
ASN 6780.0013
THR 6790.0027
PRO 6800.0040
PRO 6810.0060
HIS 6820.0071
TYR 6830.0044
HIS 6840.0019
GLY 6850.0026
PHE 6860.0044
PRO 6870.0052
VAL 6880.0043
ARG 6890.0061
LEU 6900.0064
PHE 6910.0048
ASP 6920.0092
THR 6930.0111
SER 6940.0155
SER 6950.0147
CYS 6960.0147
GLU 10.0097
ALA 20.0100
ALA 30.0058
ALA 40.0029
LYS 50.0056
MET 60.0045
GLN 70.0025
ARG 80.0016
LEU 90.0031
VAL 100.0034
LEU 110.0007
LEU 120.0002
LEU 130.0005
ALA 140.0006
ILE 150.0006
SER 160.0017
LEU 170.0028
LEU 180.0017
LEU 190.0025
TYR 200.0040
GLN 210.0049
ASP 220.0041
LEU 230.0055
PRO 240.0062
VAL 250.0072
ARG 260.0046
SER 270.0047
GLU 280.0031
PHE 290.0052
GLU 300.0097
LEU 310.0084
ASP 320.0068
ARG 330.0070
ILE 340.0078
CYS 350.0070
GLY 360.0123
TYR 370.0170
GLY 380.0077
THR 390.0111
ALA 400.0057
ARG 410.0063
CYS 420.0062
ARG 430.0062
LYS 440.0061
LYS 450.0066
CYS 460.0088
ARG 470.0093
SER 480.0107
GLN 490.0091
GLU 500.0077
TYR 510.0074
ARG 520.0070
ILE 530.0078
GLY 540.0073
ARG 550.0065
CYS 560.0069
PRO 570.0070
ASN 580.0059
THR 590.0059
TYR 600.0055
ALA 610.0071
CYS 620.0057
CYS 630.0060
LEU 640.0053
ARG 650.0061
LYS 660.0023
TRP 670.0032
ASP 680.0065
GLU 690.0069
SER 700.0107
LEU 710.0093
LEU 720.0073
ASN 730.0075
ARG 740.0088
THR 750.0076
LYS 760.0026
PRO 770.0023
GLU 780.0100
ALA 790.0128
ALA 800.0074
ALA 810.0172
LYS 820.0136
LYS 830.0119
GLU 840.0091
MET 850.0076
ASN 860.0088
LEU 870.0092
SER 880.0102
VAL 890.0108
GLY 900.0118
LEU 910.0118
GLY 920.0240
GLY 930.0353
GLY 940.0311
SER 950.0190
ASN 960.0125
LEU 970.0126
SER 980.0116
VAL 990.0112
GLY 1000.0105
LEU 1010.0051
GLY 1020.0111
GLU 1030.0128
ILE 1040.0164
GLY 1050.0188
GLY 1060.0190
GLY 1070.0173
SER 1080.0161
LYS 1090.0098
LEU 1100.0107
LEU 1110.0082
ASP 1120.0143
ILE 1130.0161
ASN 1140.0233
LEU 1150.0244
GLY 1160.0242
ARG 1170.0205
GLY 1180.0331
GLY 1190.0280
GLY 1200.0123
SER 1210.0046
MET 1220.0042
VAL 1230.0059
ASP 1240.0056
LEU 1250.0085
THR 1260.0082
PHE 1270.0048
GLY 1280.0081
GLY 1290.0074
VAL 1300.0071
GLY 1310.0100
GLY 1320.0096
GLY 1330.0075
SER 1340.0131
THR 1350.0156
PHE 1360.0168
THR 1370.0150
PHE 1380.0107
PHE 1390.0090
PRO 1400.0060
LEU 1410.0086
VAL 1420.0120
ILE 1430.0141
GLY 1440.0256
GLY 1450.0341
GLY 1460.0363
SER 1470.0353
ASP 1480.0343
ALA 1490.0268
MET 1500.0193
TYR 1510.0138
LEU 1520.0122
GLY 1530.0130
PHE 1540.0141
ALA 1550.0185
ALA 1560.0212
GLY 1570.0219
GLY 1580.0205
GLY 1590.0164
SER 1600.0104
ALA 1610.0161
GLY 1620.0144
GLY 1630.0166
GLU 1640.0154
ASN 1650.0162
HIS 1660.0089
VAL 1670.0069
ALA 1680.0034
PHE 1690.0064
GLY 1700.0095
PRO 1710.0322
GLY 1720.0310
PRO 1730.0319
GLY 1740.0248
VAL 1750.0200
ASP 1760.0132
LEU 1770.0054
THR 1780.0124
PHE 1790.0241
GLY 1800.0358
GLY 1810.0438
VAL 1820.0256
GLN 1830.0093
PHE 1840.0178
ALA 1850.0355
MET 1860.0542
VAL 1870.0606
ASN 1880.0274
ASN 1890.0271
GLY 1900.0302
PRO 1910.0440
GLY 1920.0478
PRO 1930.0385
GLY 1940.0301
GLU 1950.0224
SER 1960.0157
PHE 1970.0109
THR 1980.0070
ALA 1990.0099
GLN 2000.0208
PRO 2010.0076
ALA 2020.0145
ASP 2030.0225
MET 2040.0101
GLN 2050.0254
ALA 2060.0201
GLY 2070.0106
ILE 2080.0301
LYS 2090.0269
GLY 2100.0617
PRO 2110.0225
GLY 2120.0177
PRO 2130.0114
GLY 2140.0251
GLY 2150.0299
SER 2160.0135
ILE 2170.0172
GLN 2180.0184
VAL 2190.0278
ILE 2200.0292
ASN 2210.0705
GLY 2220.0488
SER 2230.0297
THR 2240.0112
ILE 2250.0241
GLY 2260.0174
THR 2270.0135
GLY 2280.0146
SER 2290.0253
LYS 2300.0200
LYS 2310.0228
THR 2320.0281
ILE 2330.0172
LEU 2340.0197
ILE 2350.0159
TYR 2360.0179
SER 2370.0163
ILE 2380.0127
ILE 2390.0116
GLY 2400.0085
VAL 2410.0070
LYS 2420.0078
LYS 2430.0124
GLY 2440.0125
THR 2450.0132
LEU 2460.0137
ALA 2470.0129
TRP 2480.0160
ALA 2490.0151
ARG 2500.0188
THR 2510.0259
GLY 2520.0292
PHE 2530.0337
SER 2540.0386
PRO 2550.0450
ALA 2560.0266
LYS 2570.0190
LYS 2580.0174
LEU 2590.0235
ASN 2600.0367
ALA 2610.0479
GLY 2620.0221
VAL 2630.0218
VAL 2640.0187
ARG 2650.0454
VAL 2660.0274
PHE 2670.0251
PHE 2680.0099
LEU 2690.0145
ASN 2700.0062
GLN 2710.0075
LYS 2720.0179
LYS 2730.0232
ALA 2740.0183
LYS 2750.0117
ASP 2760.0132
VAL 2770.0189
LEU 2780.0155
ARG 2790.0079
LYS 2800.0132
THR 2810.0207
SER 2820.0238
ARG 2830.0112
PRO 2840.0121
MET 2850.0196
VAL 2860.0240
ASP 2870.0269
LEU 2880.0214
THR 2890.0213
PHE 2900.0143
GLY 2910.0259
GLY 2920.0253

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.