CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 99  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0557
THR 260.0052
LYS 270.0048
CYS 280.0043
THR 290.0055
VAL 300.0076
SER 310.0091
HIS 320.0115
GLU 330.0104
VAL 340.0084
ALA 350.0056
ASP 360.0044
CYS 370.0028
SER 380.0037
HIS 390.0041
LEU 400.0031
LYS 410.0050
LEU 420.0037
THR 430.0035
GLN 440.0025
VAL 450.0019
PRO 460.0025
ASP 470.0036
ASP 480.0048
LEU 490.0050
PRO 500.0067
THR 510.0063
ASN 520.0076
ILE 530.0064
THR 540.0072
VAL 550.0065
LEU 560.0046
ASN 570.0043
LEU 580.0036
THR 590.0048
HIS 600.0053
ASN 610.0045
GLN 620.0043
LEU 630.0033
ARG 640.0032
ARG 650.0031
LEU 660.0027
PRO 670.0023
ALA 680.0030
ALA 690.0026
ASN 700.0021
PHE 710.0027
THR 720.0032
ARG 730.0037
TYR 740.0040
SER 750.0049
GLN 760.0050
LEU 770.0043
THR 780.0048
SER 790.0040
LEU 800.0033
ASP 810.0034
VAL 820.0033
GLY 830.0038
PHE 840.0040
ASN 850.0036
THR 860.0032
ILE 870.0031
SER 880.0033
LYS 890.0034
LEU 900.0032
GLU 910.0031
PRO 920.0033
GLU 930.0034
LEU 940.0028
CYS 950.0028
GLN 960.0037
LYS 970.0034
LEU 980.0032
PRO 990.0035
MET 1000.0033
LEU 1010.0022
LYS 1020.0017
VAL 1030.0014
LEU 1040.0019
ASN 1050.0019
LEU 1060.0026
GLN 1070.0030
HIS 1080.0034
ASN 1090.0033
GLU 1100.0038
LEU 1110.0041
SER 1120.0044
GLN 1130.0043
LEU 1140.0041
SER 1150.0040
ASP 1160.0030
LYS 1170.0031
THR 1180.0030
PHE 1190.0026
ALA 1200.0025
PHE 1210.0017
CYS 1220.0014
THR 1230.0010
ASN 1240.0009
LEU 1250.0012
THR 1260.0023
GLU 1270.0028
LEU 1280.0031
HIS 1290.0036
LEU 1300.0039
MET 1310.0047
SER 1320.0050
ASN 1330.0050
SER 1340.0051
ILE 1350.0048
GLN 1360.0051
LYS 1370.0048
ILE 1380.0044
LYS 1390.0043
ASN 1400.0039
ASN 1410.0037
PRO 1420.0040
PHE 1430.0036
VAL 1440.0032
LYS 1450.0033
GLN 1460.0032
LYS 1470.0033
ASN 1480.0033
LEU 1490.0035
ILE 1500.0039
THR 1510.0045
LEU 1520.0045
ASP 1530.0051
LEU 1540.0051
SER 1550.0054
HIS 1560.0060
ASN 1570.0061
GLY 1580.0060
LEU 1590.0056
SER 1600.0053
SER 1610.0055
THR 1620.0046
LYS 1630.0051
LEU 1640.0055
GLY 1650.0057
THR 1660.0053
GLN 1670.0053
VAL 1680.0048
GLN 1690.0044
LEU 1700.0040
GLU 1710.0039
ASN 1720.0041
LEU 1730.0042
GLN 1740.0043
GLU 1750.0046
LEU 1760.0041
LEU 1770.0046
LEU 1780.0044
SER 1790.0046
ASN 1800.0051
ASN 1810.0051
LYS 1820.0052
ILE 1830.0046
GLN 1840.0053
ALA 1850.0061
LEU 1860.0055
LYS 1870.0067
SER 1880.0062
GLU 1890.0072
GLU 1900.0063
LEU 1910.0045
ASP 1920.0048
ILE 1930.0047
PHE 1940.0035
ALA 1950.0035
ASN 1960.0034
SER 1970.0034
SER 1980.0037
LEU 1990.0037
LYS 2000.0047
LYS 2010.0042
LEU 2020.0032
GLU 2030.0034
LEU 2040.0030
SER 2050.0031
SER 2060.0029
ASN 2070.0035
GLN 2080.0043
ILE 2090.0045
LYS 2100.0063
GLU 2110.0069
PHE 2120.0062
SER 2130.0074
PRO 2140.0079
GLY 2150.0067
CYS 2160.0052
PHE 2170.0043
HIS 2180.0044
ALA 2190.0039
ILE 2200.0031
GLY 2210.0034
ARG 2220.0040
LEU 2230.0039
PHE 2240.0048
GLY 2250.0042
LEU 2260.0031
PHE 2270.0028
LEU 2280.0027
ASN 2290.0025
ASN 2300.0024
VAL 2310.0033
GLN 2320.0043
LEU 2330.0044
GLY 2340.0054
PRO 2350.0060
SER 2360.0067
LEU 2370.0059
THR 2380.0055
GLU 2390.0061
LYS 2400.0057
LEU 2410.0057
CYS 2420.0059
LEU 2430.0063
GLU 2440.0054
LEU 2450.0050
ALA 2460.0058
ASN 2470.0061
THR 2480.0052
SER 2490.0054
ILE 2500.0046
ARG 2510.0043
ASN 2520.0038
LEU 2530.0034
SER 2540.0030
LEU 2550.0029
SER 2560.0029
ASN 2570.0033
SER 2580.0035
GLN 2590.0046
LEU 2600.0049
SER 2610.0059
THR 2620.0048
THR 2630.0040
SER 2640.0029
ASN 2650.0022
THR 2660.0050
THR 2670.0049
PHE 2680.0049
LEU 2690.0052
GLY 2700.0053
LEU 2710.0053
LYS 2720.0061
TRP 2730.0059
THR 2740.0051
ASN 2750.0050
LEU 2760.0027
THR 2770.0026
MET 2780.0026
LEU 2790.0024
ASP 2800.0024
LEU 2810.0027
SER 2820.0034
TYR 2830.0041
ASN 2840.0043
ASN 2850.0055
LEU 2860.0063
ASN 2870.0062
VAL 2880.0044
VAL 2890.0036
GLY 2900.0018
ASN 2910.0030
ASP 2920.0032
SER 2930.0030
PHE 2940.0039
ALA 2950.0039
TRP 2960.0040
LEU 2970.0036
PRO 2980.0035
GLN 2990.0032
LEU 3000.0031
GLU 3010.0035
TYR 3020.0034
PHE 3030.0026
PHE 3040.0027
LEU 3050.0021
GLU 3060.0039
TYR 3070.0045
ASN 3080.0043
ASN 3090.0054
ILE 3100.0048
GLN 3110.0051
HIS 3120.0027
LEU 3130.0038
PHE 3140.0037
SER 3150.0067
HIS 3160.0048
SER 3170.0044
LEU 3180.0047
HIS 3190.0049
GLY 3200.0051
LEU 3210.0045
PHE 3220.0046
ASN 3230.0049
VAL 3240.0046
ARG 3250.0045
TYR 3260.0042
LEU 3270.0031
ASN 3280.0023
LEU 3290.0015
LYS 3300.0019
ARG 3310.0039
SER 3320.0020
PHE 3330.0032
THR 3340.0049
LYS 3350.0068
GLN 3360.0061
SER 3370.0080
ILE 3380.0087
SER 3390.0110
LEU 3400.0105
ALA 3410.0070
SER 3420.0052
LEU 3430.0037
PRO 3440.0014
LYS 3450.0019
ILE 3460.0042
ASP 3470.0052
ASP 3480.0063
PHE 3490.0068
SER 3500.0057
PHE 3510.0061
GLN 3520.0057
TRP 3530.0057
LEU 3540.0057
LYS 3550.0056
CYS 3560.0056
LEU 3570.0055
GLU 3580.0056
HIS 3590.0060
LEU 3600.0061
ASN 3610.0032
MET 3620.0026
GLU 3630.0018
ASP 3640.0015
ASN 3650.0024
ASP 3660.0052
ILE 3670.0056
PRO 3680.0055
GLY 3690.0052
ILE 3700.0061
LYS 3710.0086
SER 3720.0083
ASN 3730.0084
MET 3740.0089
PHE 3750.0091
THR 3760.0078
GLY 3770.0069
LEU 3780.0074
ILE 3790.0069
ASN 3800.0070
LEU 3810.0088
LYS 3820.0088
TYR 3830.0085
LEU 3840.0079
SER 3850.0077
LEU 3860.0064
SER 3870.0060
ASN 3880.0061
SER 3890.0066
PHE 3900.0066
THR 3910.0085
SER 3920.0083
LEU 3930.0082
ARG 3940.0081
THR 3950.0084
LEU 3960.0103
THR 3970.0116
ASN 3980.0125
GLU 3990.0135
THR 4000.0125
PHE 4010.0117
VAL 4020.0117
SER 4030.0118
LEU 4040.0119
ALA 4050.0119
HIS 4060.0094
SER 4070.0102
PRO 4080.0110
LEU 4090.0114
HIS 4100.0124
ILE 4110.0117
LEU 4120.0106
ASN 4130.0098
LEU 4140.0087
THR 4150.0081
LYS 4160.0079
ASN 4170.0085
LYS 4180.0076
ILE 4190.0072
SER 4200.0063
LYS 4210.0062
ILE 4220.0084
GLU 4230.0098
SER 4240.0119
ASP 4250.0144
ALA 4260.0123
PHE 4270.0129
SER 4280.0137
TRP 4290.0146
LEU 4300.0144
GLY 4310.0145
HIS 4320.0147
LEU 4330.0134
GLU 4340.0126
VAL 4350.0116
LEU 4360.0101
ASP 4370.0090
LEU 4380.0072
GLY 4390.0065
LEU 4400.0076
ASN 4410.0071
GLU 4420.0051
ILE 4430.0031
GLY 4440.0020
GLN 4450.0043
GLU 4460.0074
LEU 4470.0081
THR 4480.0117
GLY 4490.0123
GLN 4500.0144
GLU 4510.0116
TRP 4520.0120
ARG 4530.0154
GLY 4540.0174
LEU 4550.0149
GLU 4560.0160
ASN 4570.0149
ILE 4580.0118
PHE 4590.0096
GLU 4600.0078
ILE 4610.0061
TYR 4620.0049
LEU 4630.0029
SER 4640.0042
TYR 4650.0059
ASN 4660.0048
LYS 4670.0057
TYR 4680.0056
LEU 4690.0052
GLN 4700.0086
LEU 4710.0089
THR 4720.0122
ARG 4730.0148
ASN 4740.0144
SER 4750.0104
PHE 4760.0098
ALA 4770.0138
LEU 4780.0149
VAL 4790.0120
PRO 4800.0117
SER 4810.0094
LEU 4820.0065
GLN 4830.0032
ARG 4840.0023
LEU 4850.0014
MET 4860.0016
LEU 4870.0034
ARG 4880.0054
ARG 4890.0072
VAL 4900.0060
ALA 4910.0089
LEU 4920.0077
LYS 4930.0104
ASN 4940.0117
VAL 4950.0094
ASP 4960.0110
SER 4970.0114
SER 4980.0139
PRO 4990.0124
SER 5000.0092
PRO 5010.0077
PHE 5020.0065
GLN 5030.0085
PRO 5040.0086
LEU 5050.0063
ARG 5060.0050
ASN 5070.0024
LEU 5080.0019
THR 5090.0032
ILE 5100.0037
LEU 5110.0045
ASP 5120.0052
LEU 5130.0063
SER 5140.0070
ASN 5150.0079
ASN 5160.0079
ASN 5170.0076
ILE 5180.0076
ALA 5190.0075
ASN 5200.0075
ILE 5210.0073
ASN 5220.0073
ASP 5230.0071
ASP 5240.0065
MET 5250.0062
LEU 5260.0061
GLU 5270.0069
GLY 5280.0068
LEU 5290.0062
GLU 5300.0074
LYS 5310.0079
LEU 5320.0076
GLU 5330.0089
ILE 5340.0084
LEU 5350.0076
ASP 5360.0073
LEU 5370.0062
GLN 5380.0060
HIS 5390.0057
ASN 5400.0050
ASN 5410.0039
LEU 5420.0022
ALA 5430.0029
ARG 5440.0040
LEU 5450.0041
TRP 5460.0054
LYS 5470.0103
HIS 5480.0140
ALA 5490.0171
ASN 5500.0142
PRO 5510.0193
GLY 5520.0207
GLY 5530.0159
PRO 5540.0080
ILE 5550.0074
TYR 5560.0062
PHE 5570.0076
LEU 5580.0072
LYS 5590.0086
GLY 5600.0110
LEU 5610.0103
SER 5620.0119
HIS 5630.0122
LEU 5640.0107
HIS 5650.0112
ILE 5660.0093
LEU 5670.0069
ASN 5680.0061
LEU 5690.0035
GLU 5700.0049
SER 5710.0065
ASN 5720.0036
GLY 5730.0055
PHE 5740.0050
ASP 5750.0078
GLU 5760.0087
ILE 5770.0057
PRO 5780.0072
VAL 5790.0069
GLU 5800.0072
VAL 5810.0050
PHE 5820.0049
LYS 5830.0076
ASP 5840.0096
LEU 5850.0082
PHE 5860.0098
GLU 5870.0106
LEU 5880.0084
LYS 5890.0085
ILE 5900.0077
ILE 5910.0038
ASP 5920.0048
LEU 5930.0044
GLY 5940.0071
LEU 5950.0086
ASN 5960.0080
ASN 5970.0086
LEU 5980.0079
ASN 5990.0085
THR 6000.0082
LEU 6010.0085
PRO 6020.0093
ALA 6030.0091
SER 6040.0068
VAL 6050.0052
PHE 6060.0043
ASN 6070.0061
ASN 6080.0063
GLN 6090.0039
VAL 6100.0044
SER 6110.0044
LEU 6120.0026
LYS 6130.0039
SER 6140.0041
LEU 6150.0034
ASN 6160.0066
LEU 6170.0069
GLN 6180.0076
LYS 6190.0083
ASN 6200.0080
LEU 6210.0077
ILE 6220.0074
THR 6230.0056
SER 6240.0058
VAL 6250.0071
GLU 6260.0082
LYS 6270.0084
LYS 6280.0085
VAL 6290.0073
PHE 6300.0069
GLY 6310.0068
PRO 6320.0056
ALA 6330.0046
PHE 6340.0050
ARG 6350.0050
ASN 6360.0025
LEU 6370.0027
THR 6380.0029
GLU 6390.0029
LEU 6400.0036
ASP 6410.0076
MET 6420.0066
ARG 6430.0067
PHE 6440.0063
ASN 6450.0056
PRO 6460.0033
PHE 6470.0032
ASP 6480.0014
CYS 6490.0023
THR 6500.0031
CYS 6510.0032
GLU 6520.0054
SER 6530.0048
ILE 6540.0053
ALA 6550.0063
TRP 6560.0083
PHE 6570.0078
VAL 6580.0079
ASN 6590.0086
TRP 6600.0085
ILE 6610.0074
ASN 6620.0092
GLU 6630.0053
THR 6640.0036
HIS 6650.0081
THR 6660.0031
ASN 6670.0041
ILE 6680.0054
PRO 6690.0082
GLU 6700.0100
LEU 6710.0105
SER 6720.0107
SER 6730.0102
HIS 6740.0081
TYR 6750.0064
LEU 6760.0086
CYS 6770.0058
ASN 6780.0054
THR 6790.0067
PRO 6800.0104
PRO 6810.0169
HIS 6820.0183
TYR 6830.0134
HIS 6840.0137
GLY 6850.0150
PHE 6860.0125
PRO 6870.0115
VAL 6880.0076
ARG 6890.0107
LEU 6900.0115
PHE 6910.0089
ASP 6920.0079
THR 6930.0067
SER 6940.0066
SER 6950.0038
CYS 6960.0053
GLU 10.0557
ALA 20.0511
ALA 30.0342
ALA 40.0247
LYS 50.0270
MET 60.0177
GLN 70.0124
ARG 80.0133
LEU 90.0114
VAL 100.0088
LEU 110.0113
LEU 120.0112
LEU 130.0151
ALA 140.0154
ILE 150.0130
SER 160.0186
LEU 170.0283
LEU 180.0255
LEU 190.0119
TYR 200.0153
GLN 210.0339
ASP 220.0424
LEU 230.0310
PRO 240.0350
VAL 250.0127
ARG 260.0163
SER 270.0175
GLU 280.0145
PHE 290.0164
GLU 300.0179
LEU 310.0113
ASP 320.0073
ARG 330.0085
ILE 340.0062
CYS 350.0043
GLY 360.0020
TYR 370.0014
GLY 380.0021
THR 390.0039
ALA 400.0046
ARG 410.0051
CYS 420.0051
ARG 430.0038
LYS 440.0034
LYS 450.0037
CYS 460.0070
ARG 470.0092
SER 480.0127
GLN 490.0107
GLU 500.0069
TYR 510.0066
ARG 520.0060
ILE 530.0075
GLY 540.0076
ARG 550.0070
CYS 560.0069
PRO 570.0078
ASN 580.0068
THR 590.0065
TYR 600.0052
ALA 610.0047
CYS 620.0039
CYS 630.0036
LEU 640.0035
ARG 650.0055
LYS 660.0051
TRP 670.0112
ASP 680.0175
GLU 690.0160
SER 700.0289
LEU 710.0228
LEU 720.0108
ASN 730.0168
ARG 740.0199
THR 750.0098
LYS 760.0081
PRO 770.0124
GLU 780.0192
ALA 790.0287
ALA 800.0262
ALA 810.0138
LYS 820.0106
LYS 830.0129
GLU 840.0147
MET 850.0164
ASN 860.0133
LEU 870.0119
SER 880.0104
VAL 890.0092
GLY 900.0075
LEU 910.0074
GLY 920.0091
GLY 930.0111
GLY 940.0101
SER 950.0088
ASN 960.0078
LEU 970.0086
SER 980.0101
VAL 990.0119
GLY 1000.0132
LEU 1010.0134
GLY 1020.0127
GLU 1030.0094
ILE 1040.0088
GLY 1050.0061
GLY 1060.0154
GLY 1070.0095
SER 1080.0039
LYS 1090.0030
LEU 1100.0083
LEU 1110.0102
ASP 1120.0096
ILE 1130.0072
ASN 1140.0096
LEU 1150.0087
GLY 1160.0101
ARG 1170.0057
GLY 1180.0034
GLY 1190.0073
GLY 1200.0119
SER 1210.0062
MET 1220.0044
VAL 1230.0062
ASP 1240.0049
LEU 1250.0062
THR 1260.0056
PHE 1270.0045
GLY 1280.0030
GLY 1290.0026
VAL 1300.0034
GLY 1310.0071
GLY 1320.0081
GLY 1330.0096
SER 1340.0129
THR 1350.0176
PHE 1360.0139
THR 1370.0144
PHE 1380.0142
PHE 1390.0137
PRO 1400.0148
LEU 1410.0174
VAL 1420.0167
ILE 1430.0192
GLY 1440.0201
GLY 1450.0209
GLY 1460.0238
SER 1470.0219
ASP 1480.0160
ALA 1490.0210
MET 1500.0187
TYR 1510.0148
LEU 1520.0143
GLY 1530.0126
PHE 1540.0132
ALA 1550.0139
ALA 1560.0197
GLY 1570.0244
GLY 1580.0227
GLY 1590.0198
SER 1600.0134
ALA 1610.0199
GLY 1620.0195
GLY 1630.0178
GLU 1640.0151
ASN 1650.0128
HIS 1660.0073
VAL 1670.0056
ALA 1680.0037
PHE 1690.0031
GLY 1700.0050
PRO 1710.0298
GLY 1720.0256
PRO 1730.0225
GLY 1740.0107
VAL 1750.0053
ASP 1760.0025
LEU 1770.0060
THR 1780.0056
PHE 1790.0119
GLY 1800.0116
GLY 1810.0086
VAL 1820.0170
GLN 1830.0152
PHE 1840.0195
ALA 1850.0212
MET 1860.0166
VAL 1870.0228
ASN 1880.0196
ASN 1890.0161
GLY 1900.0268
PRO 1910.0278
GLY 1920.0200
PRO 1930.0130
GLY 1940.0134
GLU 1950.0120
SER 1960.0180
PHE 1970.0129
THR 1980.0038
ALA 1990.0052
GLN 2000.0158
PRO 2010.0092
ALA 2020.0098
ASP 2030.0171
MET 2040.0068
GLN 2050.0158
ALA 2060.0127
GLY 2070.0028
ILE 2080.0123
LYS 2090.0122
GLY 2100.0271
PRO 2110.0067
GLY 2120.0071
PRO 2130.0087
GLY 2140.0074
GLY 2150.0064
SER 2160.0112
ILE 2170.0067
GLN 2180.0071
VAL 2190.0047
ILE 2200.0079
ASN 2210.0050
GLY 2220.0082
SER 2230.0090
THR 2240.0126
ILE 2250.0170
GLY 2260.0268
THR 2270.0216
GLY 2280.0176
SER 2290.0106
LYS 2300.0144
LYS 2310.0140
THR 2320.0125
ILE 2330.0091
LEU 2340.0109
ILE 2350.0123
TYR 2360.0200
SER 2370.0179
ILE 2380.0156
ILE 2390.0148
GLY 2400.0124
VAL 2410.0222
LYS 2420.0213
LYS 2430.0229
GLY 2440.0229
THR 2450.0234
LEU 2460.0171
ALA 2470.0136
TRP 2480.0173
ALA 2490.0165
ARG 2500.0219
THR 2510.0335
GLY 2520.0361
PHE 2530.0158
SER 2540.0167
PRO 2550.0269
ALA 2560.0333
LYS 2570.0343
LYS 2580.0261
LEU 2590.0302
ASN 2600.0295
ALA 2610.0484
GLY 2620.0319
VAL 2630.0199
VAL 2640.0459
ARG 2650.0291
VAL 2660.0248
PHE 2670.0212
PHE 2680.0116
LEU 2690.0151
ASN 2700.0121
GLN 2710.0037
LYS 2720.0137
LYS 2730.0219
ALA 2740.0169
LYS 2750.0055
ASP 2760.0100
VAL 2770.0178
LEU 2780.0158
ARG 2790.0056
LYS 2800.0097
THR 2810.0095
SER 2820.0073
ARG 2830.0069
PRO 2840.0064
MET 2850.0107
VAL 2860.0186
ASP 2870.0179
LEU 2880.0200
THR 2890.0200
PHE 2900.0127
GLY 2910.0240
GLY 2920.0307

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
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Last modification: april 24th, 2026.