CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  041 TO OPEN  ***

Normal Mode Analysis for ID 2609030355141510331

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0057
mode 8 1.21 0.3244
mode 9 1.32 0.5908
mode 10 1.36 0.2257
mode 11 1.55 0.5037
mode 12 1.65 0.1304
mode 13 1.75 0.5516
mode 14 1.82 0.2602
mode 15 1.90 0.5966
mode 16 1.92 0.3040
mode 17 1.93 0.3337
mode 18 1.99 0.4296
mode 19 2.06 0.4474
mode 20 2.09 0.1941
mode 21 2.12 0.5224
mode 22 2.17 0.3449
mode 23 2.27 0.3493
mode 24 2.31 0.2252
mode 25 2.34 0.3405
mode 26 2.37 0.6009
mode 27 2.40 0.6239
mode 28 2.41 0.2748
mode 29 2.46 0.5281
mode 30 2.55 0.3463
mode 31 2.58 0.2532
mode 32 2.59 0.2744
mode 33 2.60 0.3592
mode 34 2.70 0.3268
mode 35 2.74 0.3026
mode 36 2.75 0.3522
mode 37 2.80 0.3257
mode 38 2.86 0.2789
mode 39 2.88 0.3716
mode 40 2.89 0.3380
mode 41 2.96 0.3227
mode 42 2.97 0.5925
mode 43 3.00 0.4209
mode 44 3.04 0.4205
mode 45 3.06 0.3254
mode 46 3.08 0.2226
mode 47 3.11 0.5299
mode 48 3.12 0.3461
mode 49 3.13 0.1629
mode 50 3.16 0.4318
mode 51 3.19 0.3993
mode 52 3.26 0.4252
mode 53 3.27 0.4122
mode 54 3.28 0.3879
mode 55 3.31 0.5286
mode 56 3.32 0.5253
mode 57 3.39 0.3490
mode 58 3.40 0.4839
mode 59 3.42 0.3890
mode 60 3.44 0.4508
mode 61 3.45 0.3138
mode 62 3.48 0.3997
mode 63 3.51 0.4275
mode 64 3.57 0.4787
mode 65 3.59 0.3423
mode 66 3.61 0.4538
mode 67 3.63 0.3880
mode 68 3.66 0.4174
mode 69 3.66 0.4027
mode 70 3.67 0.2412
mode 71 3.70 0.4200
mode 72 3.73 0.4752
mode 73 3.75 0.3730
mode 74 3.78 0.3889
mode 75 3.79 0.4097
mode 76 3.80 0.4049
mode 77 3.81 0.4897
mode 78 3.83 0.3379
mode 79 3.86 0.4813
mode 80 3.87 0.5207
mode 81 3.89 0.5404
mode 82 3.89 0.3534
mode 83 3.91 0.4274
mode 84 3.92 0.5000
mode 85 3.96 0.3590
mode 86 3.98 0.4354
mode 87 4.02 0.4467
mode 88 4.03 0.2555
mode 89 4.06 0.4211
mode 90 4.06 0.4294
mode 91 4.10 0.4773
mode 92 4.12 0.4123
mode 93 4.16 0.4092
mode 94 4.17 0.4485
mode 95 4.18 0.4421
mode 96 4.20 0.4369
mode 97 4.23 0.5571
mode 98 4.25 0.5032
mode 99 4.28 0.4678
mode 100 4.28 0.2527
mode 101 4.31 0.3195
mode 102 4.31 0.3729
mode 103 4.33 0.4084
mode 104 4.35 0.4596
mode 105 4.36 0.4238
mode 106 4.38 0.4003

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.