Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
Some cleaning from time to time
Sorry for the inconvenience.

* vps4b *

B-factor analysis for ID 2609092319512946827

Overall B-factor prediction

Correlation= 0.187 for 322 C-alpha atoms.

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

ATOM TYP RES RESID B-PREDICT B-SCALED B-OBS	B-SCALED	B-OBS
2 CA ALA 123 0.2355 65.8584 69.7800
7 CA ILE 124 0.1271 51.8333 68.4800
15 CA VAL 125 0.1217 51.1395 65.1900
22 CA ILE 126 0.1164 50.4553 61.3300
30 CA GLU 127 0.1170 50.5251 57.4500
39 CA ARG 128 0.1188 50.7666 54.6400
50 CA PRO 129 0.1043 48.8893 51.9500
57 CA ASN 130 0.1228 51.2783 51.3900
65 CA VAL 131 0.1003 48.3660 49.0100
72 CA LYS 132 0.0978 48.0498 47.9400
81 CA TRP 133 0.0765 45.2906 44.4100
95 CA SER 134 0.1109 49.7356 45.1600
101 CA ASP 135 0.1143 50.1800 45.4000
109 CA VAL 136 0.0848 46.3655 42.1100
116 CA ALA 137 0.0884 46.8261 41.0700
121 CA GLY 138 0.0741 44.9768 41.1600
125 CA LEU 139 0.0547 42.4702 40.3700
133 CA GLU 140 0.0693 44.3620 43.5700
142 CA GLY 141 0.0610 43.2906 39.6200
146 CA ALA 142 0.0379 40.2961 38.3200
151 CA LYS 143 0.0416 40.7738 37.2200
160 CA GLU 144 0.0566 42.7128 37.4700
169 CA ALA 145 0.0358 40.0259 34.6900
174 CA LEU 146 0.0273 38.9255 34.6600
182 CA LYS 147 0.0402 40.5974 36.0900
191 CA GLU 148 0.0444 41.1373 38.3100
200 CA ALA 149 0.0292 39.1757 36.3000
205 CA VAL 150 0.0297 39.2387 34.4800
212 CA ILE 151 0.0480 41.5981 33.3900
220 CA LEU 152 0.0625 43.4833 33.2800
228 CA PRO 153 0.0607 43.2474 32.6400
235 CA ILE 154 0.0707 44.5385 31.4600
243 CA LYS 155 0.1232 51.3277 32.3400
252 CA PHE 156 0.1259 51.6829 31.2200
263 CA PRO 157 0.1278 51.9278 31.9500
270 CA HIS 158 0.1978 60.9786 33.5600
280 CA LEU 159 0.1539 55.3059 34.8000
288 CA PHE 160 0.1264 51.7507 38.3400
299 CA THR 161 0.2346 65.7403 44.5200
306 CA GLY 162 0.3889 85.6976 51.8500
310 CA LYS 163 0.3988 86.9847 57.8800
319 CA ARG 164 0.2098 62.5391 58.6500
330 CA THR 165 0.0975 48.0055 58.7300
337 CA PRO 166 0.0532 42.2718 57.7500
344 CA TRP 167 0.0290 39.1438 57.0900
358 CA ARG 168 0.0274 38.9409 55.5200
369 CA GLY 169 0.0159 37.4511 48.0100
373 CA ILE 170 0.0106 36.7680 42.8500
381 CA LEU 171 0.0084 36.4825 40.1500
389 CA LEU 172 0.0130 37.0721 38.4100
397 CA PHE 173 0.0166 37.5415 36.2500
408 CA GLY 174 0.0265 38.8262 36.2900
412 CA PRO 175 0.0403 40.6075 37.9400
419 CA PRO 176 0.0492 41.7550 37.8700
426 CA GLY 177 0.0557 42.6057 36.2400
430 CA THR 178 0.0501 41.8793 35.5000
437 CA GLY 179 0.0534 42.3051 35.3100
441 CA LYS 180 0.0357 40.0136 37.4200
450 CA SER 181 0.0492 41.7594 39.3500
456 CA TYR 182 0.0628 43.5243 37.5700
468 CA LEU 183 0.0445 41.1514 37.2100
476 CA ALA 184 0.0352 39.9494 39.4900
481 CA LYS 185 0.0563 42.6725 38.1600
490 CA ALA 186 0.0570 42.7686 37.6500
495 CA VAL 187 0.0386 40.3848 39.0300
502 CA ALA 188 0.0481 41.6113 38.5700
507 CA THR 189 0.0698 44.4228 40.6700
514 CA GLU 190 0.0636 43.6262 45.1500
523 CA ALA 191 0.0510 41.9874 44.9000
528 CA ASN 192 0.0739 44.9575 45.6000
536 CA ASN 193 0.0821 46.0110 47.7900
544 CA SER 194 0.0656 43.8755 47.1700
550 CA THR 195 0.0756 45.1761 47.5100
557 CA PHE 196 0.0638 43.6475 46.9600
568 CA PHE 197 0.0662 43.9602 49.4200
579 CA SER 198 0.0655 43.8643 53.3700
585 CA ILE 199 0.0778 45.4607 57.1600
593 CA SER 200 0.0765 45.2952 64.3700
599 CA SER 201 0.0717 44.6660 71.9600
605 CA SER 202 0.1194 50.8434 78.9200
611 CA ASP 203 0.2499 67.7159 84.8400
619 CA LEU 204 0.4683 95.9684 89.2800
627 CA VAL 205 0.4023 87.4310 92.8100
634 CA SER 206 0.5266 103.5191 94.8300
640 CA LYS 207 0.5480 106.2793 96.3800
649 CA TRP 208 0.3443 79.9327 96.7800
663 CA LEU 209 0.2548 68.3497 94.8100
671 CA GLY 210 0.3006 74.2766 91.6200
675 CA GLU 211 0.2075 62.2429 87.9800
684 CA SER 212 0.1695 57.3233 87.1300
690 CA GLU 213 0.1269 51.8147 86.2400
699 CA LYS 214 0.1429 53.8821 83.1900
708 CA LEU 215 0.1156 50.3471 77.6500
716 CA VAL 216 0.0811 45.8855 73.3100
723 CA LYS 217 0.0995 48.2703 70.1000
732 CA ASN 218 0.1141 50.1505 64.2200
740 CA LEU 219 0.0794 45.6638 57.2000
748 CA PHE 220 0.0675 44.1204 54.6100
759 CA GLN 221 0.0978 48.0509 56.8400
768 CA LEU 222 0.1015 48.5237 52.9200
776 CA ALA 223 0.0713 44.6218 50.4600
781 CA ARG 224 0.0820 45.9970 48.7800
792 CA GLU 225 0.1163 50.4423 48.9900
801 CA ASN 226 0.1005 48.3938 48.0700
809 CA LYS 227 0.0790 45.6195 45.5900
818 CA PRO 228 0.0680 44.1945 43.6200
825 CA SER 229 0.0528 42.2203 42.4200
831 CA ILE 230 0.0369 40.1742 43.0100
839 CA ILE 231 0.0341 39.8123 44.7400
847 CA PHE 232 0.0310 39.3993 45.5400
858 CA ILE 233 0.0308 39.3730 50.1800
866 CA ASP 234 0.0370 40.1775 53.3600
874 CA GLU 235 0.0383 40.3479 56.0900
883 CA ILE 236 0.0260 38.7577 55.5000
891 CA ASP 237 0.0298 39.2528 58.1400
899 CA SER 238 0.0509 41.9811 60.8100
905 CA LEU 239 0.0498 41.8346 73.8200
913 CA CYS 240 0.0506 41.9423 81.3200
919 CA GLY 241 0.0849 46.3801 86.8300
923 CA SER 242 0.1148 50.2512 91.1400
929 CA ARG 243 0.1884 59.7662 93.9500
940 CA SER 244 0.3222 77.0785 95.5500
946 CA GLU 245 0.2436 66.9026 96.0700
955 CA ASN 246 0.2557 68.4687 95.4600
963 CA GLU 247 0.1559 55.5558 94.6500
972 CA SER 248 0.1674 57.0560 103.4200
978 CA GLU 249 0.2028 61.6308 103.5500
987 CA ALA 250 0.1585 55.9026 101.3200
992 CA ALA 251 0.1119 49.8665 98.9300
997 CA ARG 252 0.1233 51.3438 96.8900
1008 CA ARG 253 0.1329 52.5829 93.8800
1019 CA ILE 254 0.0911 47.1821 88.5700
1027 CA LYS 255 0.0697 44.4053 84.6300
1036 CA THR 256 0.0915 47.2370 81.7200
1043 CA GLU 257 0.0848 46.3706 78.3700
1052 CA PHE 258 0.0544 42.4304 75.6100
1063 CA LEU 259 0.0588 43.0012 75.1900
1071 CA VAL 260 0.0821 46.0168 76.0400
1078 CA GLN 261 0.0639 43.6582 76.2200
1087 CA MET 262 0.0469 41.4572 80.7400
1095 CA GLN 263 0.0866 46.6000 86.5000
1104 CA GLY 264 0.1012 48.4869 89.4800
1108 CA VAL 265 0.1715 57.5753 91.1700
1115 CA GLY 266 0.2285 64.9503 91.2200
1119 CA VAL 267 0.1308 52.3131 89.4900
1126 CA ASP 268 0.1060 49.1075 84.4400
1134 CA ASN 269 0.0638 43.6444 76.5900
1142 CA ASP 270 0.0729 44.8256 68.2600
1150 CA GLY 271 0.0591 43.0392 60.0900
1154 CA ILE 272 0.0430 40.9576 54.4100
1162 CA LEU 273 0.0248 38.6085 48.2100
1170 CA VAL 274 0.0191 37.8601 42.8200
1177 CA LEU 275 0.0140 37.2045 42.2100
1185 CA GLY 276 0.0137 37.1648 42.3200
1189 CA ALA 277 0.0177 37.6882 42.6000
1194 CA THR 278 0.0193 37.8939 44.2700
1201 CA ASN 279 0.0275 38.9490 46.3600
1209 CA ILE 280 0.0260 38.7569 49.2700
1217 CA PRO 281 0.0198 37.9526 51.1900
1224 CA TRP 282 0.0292 39.1685 56.5900
1238 CA VAL 283 0.0345 39.8606 60.0500
1245 CA LEU 284 0.0263 38.7919 63.0300
1253 CA ASP 285 0.0416 40.7716 66.5500
1261 CA SER 286 0.0475 41.5357 65.6100
1267 CA ALA 287 0.0516 42.0657 65.0100
1272 CA ILE 288 0.0314 39.4522 64.4200
1280 CA ARG 289 0.0243 38.5445 62.7300
1291 CA ARG 290 0.0393 40.4772 60.7400
1302 CA ARG 291 0.0304 39.3213 57.6200
1313 CA PHE 292 0.0175 37.6625 54.4900
1324 CA GLU 293 0.0259 38.7405 56.2600
1333 CA LYS 294 0.0191 37.8654 51.0000
1342 CA ARG 295 0.0141 37.2219 46.4800
1353 CA ILE 296 0.0184 37.7795 40.0500
1361 CA TYR 297 0.0228 38.3482 37.5600
1373 CA ILE 298 0.0304 39.3211 34.9700
1381 CA PRO 299 0.0431 40.9656 34.5100
1388 CA LEU 300 0.0521 42.1393 33.5400
1396 CA PRO 301 0.0592 43.0524 33.9600
1403 CA GLU 302 0.0672 44.0918 34.0100
1412 CA PRO 303 0.0749 45.0881 32.7700
1419 CA HIS 304 0.0876 46.7301 34.9100
1429 CA ALA 305 0.0698 44.4224 35.3700
1434 CA ARG 306 0.0620 43.4087 36.2200
1445 CA ALA 307 0.0697 44.4175 36.4500
1450 CA ALA 308 0.0765 45.2971 36.0900
1455 CA MET 309 0.0667 44.0213 36.5000
1463 CA PHE 310 0.0628 43.5179 39.9300
1474 CA LYS 311 0.0802 45.7745 45.2300
1483 CA LEU 312 0.0896 46.9902 47.8100
1491 CA HIS 313 0.0825 46.0648 46.9000
1501 CA LEU 314 0.0796 45.6965 47.1800
1509 CA GLY 315 0.1396 53.4490 50.7500
1513 CA THR 316 0.2128 62.9278 52.3300
1520 CA THR 317 0.1199 50.8997 49.9900
1527 CA GLN 318 0.1152 50.2906 48.4200
1536 CA ASN 319 0.0864 46.5708 43.9200
1544 CA SER 320 0.0944 47.6029 41.8000
1550 CA LEU 321 0.0883 46.8112 43.5400
1558 CA THR 322 0.1213 51.0820 44.6500
1565 CA GLU 323 0.1263 51.7368 45.3100
1574 CA ALA 324 0.1230 51.3103 41.1900
1579 CA ASP 325 0.0875 46.7099 39.0200
1587 CA PHE 326 0.0760 45.2316 37.0700
1598 CA ARG 327 0.0943 47.5996 36.7800
1609 CA GLU 328 0.0918 47.2718 36.1700
1618 CA LEU 329 0.0666 44.0064 35.1700
1626 CA GLY 330 0.0674 44.1162 34.4700
1630 CA ARG 331 0.0903 47.0721 34.7500
1641 CA LYS 332 0.0851 46.4077 36.4000
1650 CA THR 333 0.0696 44.3954 36.2200
1657 CA ASP 334 0.0808 45.8487 36.6700
1665 CA GLY 335 0.0712 44.6086 36.8300
1669 CA TYR 336 0.0648 43.7815 35.8500
1681 CA SER 337 0.0626 43.4982 36.3200
1687 CA GLY 338 0.0641 43.6826 35.5400
1691 CA ALA 339 0.0740 44.9636 34.6800
1696 CA ASP 340 0.0707 44.5428 35.0900
1704 CA ILE 341 0.0622 43.4453 35.1000
1712 CA SER 342 0.0757 45.1923 35.3100
1718 CA ILE 343 0.0859 46.5029 33.0300
1726 CA ILE 344 0.0693 44.3596 31.7000
1734 CA VAL 345 0.0683 44.2339 33.7800
1741 CA ARG 346 0.0935 47.4868 38.8900
1752 CA ASP 347 0.0915 47.2353 37.5000
1760 CA ALA 348 0.0722 44.7289 36.1200
1765 CA LEU 349 0.0854 46.4393 37.7600
1773 CA MET 350 0.1062 49.1384 37.6900
1781 CA GLN 351 0.0864 46.5778 37.0900
1790 CA PRO 352 0.0870 46.6431 35.2200
1797 CA VAL 353 0.1293 52.1157 34.2800
1804 CA ARG 354 0.1278 51.9266 35.9000
1815 CA LYS 355 0.0990 48.2008 36.0900
1824 CA VAL 356 0.1137 50.0977 37.1600
1831 CA GLN 357 0.1926 60.3118 39.7900
1840 CA SER 358 0.2101 62.5670 41.6600
1846 CA ALA 359 0.1705 57.4518 44.0800
1851 CA THR 360 0.2692 70.2192 48.9000
1858 CA HIS 361 0.2405 66.5101 52.1300
1868 CA PHE 362 0.1771 58.3078 52.1800
1879 CA LYS 363 0.2307 65.2438 53.4900
1888 CA LYS 364 0.2863 72.4315 49.8700
1897 CA VAL 365 0.2874 72.5715 47.7800
1904 CA ARG 366 0.3495 80.6029 48.2200
1915 CA GLY 367 0.3066 75.0509 44.1300
1919 CA PRO 368 0.3587 81.7909 40.9200
1926 CA SER 369 0.4343 91.5739 35.7800
1932 CA ARG 370 0.4140 88.9465 33.9300
1943 CA ALA 371 0.7582 133.4701 36.5900
1948 CA ASP 372 0.7743 135.5579 41.8800
1956 CA PRO 373 0.6398 118.1604 44.7000
1963 CA ASN 374 0.8958 151.2742 43.9500
1971 CA HIS 375 0.7338 130.3207 44.9100
1981 CA LEU 376 0.5545 107.1223 45.7100
1989 CA VAL 377 0.4655 95.6115 46.6600
1996 CA ASP 378 0.4948 99.4034 54.4800
2004 CA ASP 379 0.3743 83.8196 52.9100
2012 CA LEU 380 0.2384 66.2387 47.5900
2020 CA LEU 381 0.1718 57.6209 46.7300
2028 CA THR 382 0.1087 49.4498 48.9600
2035 CA PRO 383 0.1041 48.8594 54.2700
2042 CA CYS 384 0.1903 60.0081 65.2800
2048 CA SER 385 0.3637 82.4384 73.2400
2054 CA PRO 386 0.4576 94.5911 77.2100
2061 CA GLY 387 0.6546 120.0730 78.8100
2065 CA ASP 388 0.6009 113.1281 79.8400
2073 CA PRO 389 0.7019 126.1933 79.1400
2080 CA GLY 390 0.5119 101.6139 74.4200
2084 CA ALA 391 0.3765 84.1010 68.9800
2089 CA ILE 392 0.3723 83.5501 63.6000
2097 CA GLU 393 0.3754 83.9513 57.0700
2106 CA MET 394 0.3204 76.8370 48.6600
2114 CA THR 395 0.2666 69.8860 44.5600
2121 CA TRP 396 0.2442 66.9790 41.1400
2135 CA MET 397 0.4162 89.2337 46.3000
2143 CA ASP 398 0.3939 86.3435 43.4900
2151 CA VAL 399 0.2964 73.7348 40.6900
2158 CA PRO 400 0.4291 90.9024 39.4500
2165 CA GLY 401 0.4726 96.5319 36.8000
2169 CA ASP 402 0.4569 94.5025 36.5600
2177 CA LYS 403 0.2878 72.6187 35.0800
2186 CA LEU 404 0.1780 58.4270 33.5100
2194 CA LEU 405 0.1150 50.2702 35.5900
2202 CA GLU 406 0.0842 46.2886 35.5300
2211 CA PRO 407 0.0664 43.9844 36.0300
2218 CA VAL 408 0.0764 45.2768 35.9700
2225 CA VAL 409 0.0673 44.1069 32.5600
2232 CA SER 410 0.0665 43.9915 31.0200
2238 CA MET 411 0.0682 44.2195 31.7000
2246 CA SER 412 0.0751 45.1100 35.2500
2252 CA ASP 413 0.0638 43.6442 35.2800
2260 CA MET 414 0.0593 43.0617 33.7700
2268 CA LEU 415 0.0727 44.7959 31.7400
2276 CA ARG 416 0.0822 46.0285 32.9500
2287 CA SER 417 0.0766 45.3086 32.6100
2293 CA LEU 418 0.0711 44.5860 31.8100
2301 CA SER 419 0.1098 49.6034 36.4700
2307 CA ASN 420 0.1208 51.0217 39.9400
2315 CA THR 421 0.0970 47.9380 43.3800
2322 CA LYS 422 0.1138 50.1166 46.9600
2331 CA PRO 423 0.0839 46.2492 45.7600
2338 CA THR 424 0.0845 46.3267 47.8900
2345 CA VAL 425 0.0777 45.4460 49.3700
2352 CA ASN 426 0.1076 49.3134 54.9800
2360 CA GLU 427 0.1343 52.7613 61.6700
2369 CA HIS 428 0.1096 49.5662 63.3500
2379 CA ASP 429 0.0647 43.7647 61.7500
2387 CA LEU 430 0.0596 43.1052 61.0700
2395 CA LEU 431 0.0759 45.2113 62.2300
2403 CA LYS 432 0.0572 42.7887 63.4300
2412 CA LEU 433 0.0372 40.2052 62.9000
2420 CA LYS 434 0.0594 43.0769 65.1500
2429 CA LYS 435 0.0625 43.4836 67.9300
2438 CA PHE 436 0.0372 40.2092 67.5900
2449 CA THR 437 0.0420 40.8242 73.6000
2456 CA GLU 438 0.0724 44.7558 78.7800
2465 CA ASP 439 0.0745 45.0341 82.9200
2473 CA PHE 440 0.0539 42.3697 86.1700
2484 CA GLY 441 0.0505 41.9239 88.9300
2488 CA GLN 442 0.0413 40.7430 90.4200
2497 CA GLU 443 0.0499 41.8535 91.0400
2506 CA GLY 444 0.0553 42.5503 89.2600

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.

Should you encounter any unexpected behaviour, please let us know. elNémo has been relocated. **Some cleaning from time to time** Sorry for the inconvenience.