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***  DMD   ***

Normal Mode Analysis for ID 2609111750043690248

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0297
mode 8 1.36 0.0314
mode 9 2.81 0.0119
mode 10 4.48 0.0239
mode 11 5.53 0.5009
mode 12 5.79 0.3783
mode 13 6.09 0.0544
mode 14 7.00 0.1967
mode 15 7.50 0.1136
mode 16 8.01 0.3596
mode 17 9.34 0.0159
mode 18 10.42 0.0445
mode 19 11.74 0.2940
mode 20 11.92 0.0852
mode 21 12.62 0.2753
mode 22 12.78 0.2480
mode 23 13.74 0.0906
mode 24 14.24 0.4571
mode 25 15.36 0.4286
mode 26 15.51 0.3284
mode 27 17.40 0.4073
mode 28 18.17 0.2793
mode 29 18.66 0.3010
mode 30 19.31 0.4348
mode 31 19.79 0.4058
mode 32 20.23 0.1981
mode 33 21.03 0.0552
mode 34 21.23 0.3369
mode 35 22.38 0.4005
mode 36 22.69 0.2537
mode 37 23.18 0.0292
mode 38 24.01 0.1530
mode 39 24.20 0.5389
mode 40 24.91 0.4923
mode 41 25.22 0.4156
mode 42 26.02 0.3677
mode 43 26.60 0.4986
mode 44 26.99 0.1592
mode 45 27.29 0.0546
mode 46 27.42 0.3759
mode 47 27.94 0.3249
mode 48 28.19 0.2261
mode 49 28.76 0.1901
mode 50 28.78 0.3547
mode 51 29.44 0.4764
mode 52 30.54 0.3156
mode 53 30.81 0.0344
mode 54 31.06 0.4066
mode 55 31.78 0.2515
mode 56 32.15 0.3053
mode 57 32.27 0.3128
mode 58 32.41 0.3825
mode 59 32.66 0.4532
mode 60 32.83 0.3528
mode 61 33.06 0.4265
mode 62 33.35 0.3506
mode 63 33.82 0.3967
mode 64 34.17 0.3611
mode 65 34.31 0.4210
mode 66 34.83 0.1841
mode 67 35.44 0.1002
mode 68 35.60 0.2313
mode 69 35.91 0.2831
mode 70 36.29 0.2703
mode 71 36.69 0.5103
mode 72 36.82 0.4342
mode 73 36.99 0.3438
mode 74 37.09 0.3243
mode 75 37.94 0.4704
mode 76 38.10 0.2946
mode 77 38.72 0.5290
mode 78 38.80 0.4595
mode 79 38.91 0.2384
mode 80 39.07 0.2555
mode 81 39.09 0.4399
mode 82 39.40 0.3269
mode 83 39.98 0.3961
mode 84 40.38 0.5039
mode 85 40.58 0.3596
mode 86 40.67 0.4515
mode 87 40.91 0.2031
mode 88 41.37 0.4284
mode 89 41.68 0.4355
mode 90 41.88 0.4025
mode 91 42.15 0.4006
mode 92 42.71 0.4041
mode 93 42.92 0.2753
mode 94 43.22 0.3576
mode 95 43.36 0.4603
mode 96 43.42 0.4366
mode 97 43.59 0.4077
mode 98 43.92 0.4217
mode 99 44.50 0.4926
mode 100 44.76 0.4782
mode 101 45.02 0.6003
mode 102 45.18 0.5028
mode 103 45.32 0.5091
mode 104 45.81 0.4395
mode 105 46.01 0.4851
mode 106 46.28 0.0438

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.