CNRS Nantes University US2B US2B
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***  MDH2 homodimer  ***

Normal Mode Analysis for ID 2609161750571071015

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6827
mode 8 1.23 0.7424
mode 9 1.44 0.7025
mode 10 2.01 0.5274
mode 11 2.10 0.4595
mode 12 2.24 0.7007
mode 13 2.34 0.6945
mode 14 2.62 0.5473
mode 15 2.79 0.6889
mode 16 2.83 0.5243
mode 17 2.99 0.4956
mode 18 3.11 0.5576
mode 19 3.37 0.4711
mode 20 3.40 0.4941
mode 21 3.60 0.3190
mode 22 3.66 0.3744
mode 23 3.72 0.6243
mode 24 3.77 0.4557
mode 25 3.97 0.6376
mode 26 4.00 0.4048
mode 27 4.07 0.4779
mode 28 4.10 0.5810
mode 29 4.21 0.6276
mode 30 4.28 0.5545
mode 31 4.33 0.5008
mode 32 4.46 0.5695
mode 33 4.54 0.6946
mode 34 4.57 0.5260
mode 35 4.65 0.6891
mode 36 4.69 0.7312
mode 37 4.71 0.5490
mode 38 4.78 0.4971
mode 39 4.85 0.5819
mode 40 4.87 0.5654
mode 41 4.94 0.3637
mode 42 4.96 0.4678
mode 43 5.01 0.4340
mode 44 5.07 0.5871
mode 45 5.10 0.5535
mode 46 5.17 0.5311
mode 47 5.30 0.5464
mode 48 5.35 0.5350
mode 49 5.44 0.5640
mode 50 5.49 0.3381
mode 51 5.55 0.5818
mode 52 5.57 0.5381
mode 53 5.60 0.4285
mode 54 5.69 0.4663
mode 55 5.80 0.4897
mode 56 5.82 0.3454
mode 57 5.85 0.3857
mode 58 5.92 0.5150
mode 59 5.93 0.3973
mode 60 5.97 0.5356
mode 61 6.02 0.5184
mode 62 6.07 0.5007
mode 63 6.15 0.3352
mode 64 6.18 0.2828
mode 65 6.20 0.4612
mode 66 6.25 0.5534
mode 67 6.27 0.4865
mode 68 6.29 0.5270
mode 69 6.36 0.4818
mode 70 6.41 0.4826
mode 71 6.44 0.4643
mode 72 6.45 0.2844
mode 73 6.48 0.2680
mode 74 6.50 0.4414
mode 75 6.54 0.5005
mode 76 6.58 0.3765
mode 77 6.60 0.5101
mode 78 6.62 0.4589
mode 79 6.66 0.5005
mode 80 6.71 0.5509
mode 81 6.73 0.5442
mode 82 6.75 0.4287
mode 83 6.76 0.4855
mode 84 6.84 0.5028
mode 85 6.89 0.4601
mode 86 6.90 0.4555
mode 87 6.96 0.4789
mode 88 7.01 0.4877
mode 89 7.03 0.5465
mode 90 7.06 0.5609
mode 91 7.13 0.5783
mode 92 7.15 0.5182
mode 93 7.17 0.5787
mode 94 7.20 0.6007
mode 95 7.24 0.4243
mode 96 7.25 0.5699
mode 97 7.29 0.5119
mode 98 7.35 0.4069
mode 99 7.36 0.5605
mode 100 7.43 0.5349
mode 101 7.44 0.4961
mode 102 7.48 0.4924
mode 103 7.51 0.4403
mode 104 7.59 0.4899
mode 105 7.63 0.5069
mode 106 7.66 0.5217

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.