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Should you encounter any unexpected behaviour,
please let us know.
elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.
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***  Maltodextrin bp  ***
<R2> analysis for EXAMPLE2---  normal mode 7  ---
ERROR: computation failed !
Here is the logfile, STDOUT output:
running: ../bin/get_rmsmod.sh EXAMPLE2 9
rms_mode
Rmsmod> Version 1.20, Bordeaux.
Getnam> Eigenvector filename ?
Getnam> ../EXAMPLE2.dir/EXAMPLE2.eigenfacs
Getnum> Eigenvector Number ?
Getnum> 9
Openam> file on opening on unit 10:
../EXAMPLE2.dir/EXAMPLE2.eigenfacs
Getnam> Corresponding pdb file ?
Getnam> ../EXAMPLE2.atom
Openam> file on opening on unit 11:
../EXAMPLE2.atom
Getrep> Are the masses given in the pdb files ? (y/n)
Getrep> F
Rmsmod> All masses will all be assumed to be of 1.
Rdmodfacs> Old Blzpack file format detected.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 1
Rdmodfacs> Frequence du vecteur en lecture: 3.4318E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 2
Rdmodfacs> Frequence du vecteur en lecture: 3.4332E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 3
Rdmodfacs> Frequence du vecteur en lecture: 3.4335E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 4
Rdmodfacs> Frequence du vecteur en lecture: 3.4347E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 5
Rdmodfacs> Frequence du vecteur en lecture: 3.4350E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 6
Rdmodfacs> Frequence du vecteur en lecture: 3.4367E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 7
Rdmodfacs> Frequence du vecteur en lecture: 155.0
Rdmodfacs> Numero du vecteur CERFACS en lecture: 8
Rdmodfacs> Frequence du vecteur en lecture: 157.3
Rdmodfacs> Numero du vecteur CERFACS en lecture: 9
Rdmodfacs> Frequence du vecteur en lecture: 218.4
Rmsmod> 9 vectors, 8580 coordinates in file.
Rdatompdb> Reading pdb file.
Rdatompdb> End of file reached.
Rdatompdb> Number of I/O errors: 0
Rdatompdb> Number of residues found = 370
First residue number = 1
Last residue number = 370
Number of atoms found = 2860
Mean number per residue = 7.7
Rmsmod> Cartesian (eigen)vectors will be studied.
Openam> file on opening on unit 12:
rmsmod.res
Rmsmod> Displacement=f(atom number) to be written in this file.
Openam> file on opening on unit 13:
eigvec.res
Rmsmod> Vector coordinates=f(atom number) to be written in this file.
Rmsmod> Norm of vector 9 = 1.0000
Rmsmod> Normal end.
Here is the logfile, STDERR output:
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.
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