***  E.Coli Tol C  ***

<R²> analysis for EXAMPLE5

---  normal mode 103  ---

ERROR: computation failed !

Here is the logfile, STDOUT output:

running: ../bin/get_rmsmod.sh EXAMPLE5 7
rms_mode
 Rmsmod> Version 1.20, Bordeaux.                
 Getnam> Eigenvector filename ?
 Getnam> ../EXAMPLE5.dir/EXAMPLE5.eigenfacs
 Getnum> Eigenvector Number ?
 Getnum>  7

 Openam> file on opening on unit     10:
 ../EXAMPLE5.dir/EXAMPLE5.eigenfacs                              
 Getnam> Corresponding pdb file ?
 Getnam> ../EXAMPLE5.atom

 Openam> file on opening on unit     11:
 ../EXAMPLE5.atom                                                
 Getrep> Are the masses given in the pdb files ? (y/n)
 Getrep>  F

 Rmsmod> All masses will all be assumed to be of 1.

 Rdmodfacs> Old Blzpack file format detected.

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     1
 Rdmodfacs> Frequence du vecteur en lecture:  3.4332E-03

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     2
 Rdmodfacs> Frequence du vecteur en lecture:  3.4332E-03

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     3
 Rdmodfacs> Frequence du vecteur en lecture:  3.4332E-03

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     4
 Rdmodfacs> Frequence du vecteur en lecture:  3.4334E-03

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     5
 Rdmodfacs> Frequence du vecteur en lecture:  3.4337E-03

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     6
 Rdmodfacs> Frequence du vecteur en lecture:  3.4342E-03

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     7
 Rdmodfacs> Frequence du vecteur en lecture:   99.05    

 Rmsmod>    7 vectors,  29754 coordinates in file.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:  0

 Rdatompdb> Number of residues found =   1284
            First residue number     =      1
            Last  residue number     =    428
            Number of atoms found    =   9918
            Mean number per residue  =      7.7

 Rmsmod> Cartesian (eigen)vectors will be studied.

 Openam> file on opening on unit     12:
 rmsmod.res                                                      
 Rmsmod> Displacement=f(atom number) to be written in this file.

 Openam> file on opening on unit     13:
 eigvec.res                                                      
 Rmsmod> Vector coordinates=f(atom number) to be written in this file.
 Rmsmod> Norm of vector     7 =    .9999

 Rmsmod> Normal end.

Here is the logfile, STDERR output:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.